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GGT7
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:35.8 nTPM
HPA:35.8 nTPM
GTEx:28.3 nTPM
FANTOM5:42.4 Scaled Tags Per Million
Pig:28.7 nTPM
Mouse:61.9 nTPM
Allen mouse:7.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA013204
Glial cells Low
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 35.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 23.9
1781 Male, age 74, unknown 29.5
2289 Male, age 61, right hemisphere 27.9
2288 Male, age 75, left hemisphere 26.9
1854 Male, age 80, left hemisphere 24.2
2290 Female, age 72, unknown 23.2
2846 Female, age 79, unknown 22.9
1857 Female, age 85, left hemisphere 20.7
2481 Female, age 94, left hemisphere 16.0
Claustrum
nTPM: 33.0
2284 Female, age 91, both hemispheres 39.6
2491 Male, age 75, both hemispheres 37.5
2568 Male, age 61, both hemispheres 36.2
2198 Male, age 80, both hemispheres 35.7
2645 Female, age 72, unknown 34.7
2392 Female, age 94, both hemispheres 30.7
1956 Male, age 74, unknown 28.7
2292 Female, age 85, both hemispheres 28.3
2196 Female, age 79, unknown 25.9
Globus pallidus, externus
nTPM: 20.7
2646 Male, age 61, right hemisphere 23.1
2772 Female, age 79, unknown 21.9
2395 Male, age 75, both hemispheres 21.5
2567 Female, age 72, unknown 20.1
1996 Male, age 80, right hemisphere 16.7
Globus pallidus, internus
nTPM: 20.1
2111 Female, age 85, right hemisphere 22.7
1818 Male, age 74, unknown 22.2
2566 Female, age 72, unknown 22.2
2778 Female, age 91, both hemispheres 20.6
2037 Male, age 80, right hemisphere 19.9
2287 Male, age 75, right hemisphere 17.8
2483 Female, age 94, right hemisphere 15.5
Nucleus accumbens
nTPM: 25.0
2824 Male, age 61, right hemisphere 29.8
1783 Male, age 74, unknown 28.1
1856 Female, age 91, right hemisphere 26.7
2286 Male, age 75, left hemisphere 26.1
2732 Male, age 80, right hemisphere 25.5
1806 Female, age 85, left hemisphere 24.3
2698 Female, age 72, unknown 19.6
2391 Female, age 94, left hemisphere 19.5
Nucleus basalis of Meynert
nTPM: 24.2
2484 Female, age 94, left hemisphere 27.0
2821 Male, age 75, both hemispheres 26.4
2393 Male, age 80, right hemisphere 23.1
2569 Male, age 61, both hemispheres 20.5
Nucleus of the diagonal band
nTPM: 31.9
2029 Male, age 61, right hemisphere 36.6
2775 Male, age 80, right hemisphere 33.8
2195 Female, age 85, both hemispheres 33.7
1979 Male, age 74, unknown 29.7
1812 Female, age 91, both hemispheres 25.9
Olfactory tubercle
nTPM: 35.8
1998 Female, age 91, both hemispheres 42.5
2487 Female, age 94, left hemisphere 41.1
2856 Male, age 75, right hemisphere 31.6
1846 Male, age 80, right hemisphere 28.2
Putamen
nTPM: 25.4
2466 Female, age 79, unknown 29.7
1937 Female, age 91, right hemisphere 28.6
2647 Male, age 75, left hemisphere 27.3
1838 Male, age 80, right hemisphere 26.1
1829 Male, age 74, unknown 23.5
2489 Female, age 72, unknown 23.1
2482 Female, age 94, left hemisphere 19.2
Septal nuclei
nTPM: 31.5
1960 Male, age 74, unknown 35.8
2059 Female, age 85, both hemispheres 33.0
2009 Female, age 91, both hemispheres 31.8
2031 Female, age 72, unknown 31.5
2629 Female, age 94, right hemisphere 30.5
2394 Male, age 61, left hemisphere 30.1
2199 Male, age 80, right hemisphere 27.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.7
Samples: 246

Max nTPM: 51.1
Min nTPM: 11.3
Std nTPM: 7.1
Median nTPM: 24.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 51.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 43.9
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 39.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 39.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 38.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 37.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 37.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 37.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 37.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 37.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.3
Samples: 246

Max nTPM: 50.1
Min nTPM: 7.4
Std nTPM: 8.7
Median nTPM: 28.7
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 50.1
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 47.5
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 46.6
GTEX-14PQA-0011-R6b-SM-6AJAM 50-59 years, female 46.2
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 46.0
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 45.2
GTEX-XLM4-0011-R6A-SM-4AT4B 60-69 years, male 43.9
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 43.8
GTEX-17F97-0011-R6a-SM-7EPGS 50-59 years, male 43.6
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 43.4
GTEX-18464-0011-R6a-SM-731CA 50-59 years, male 42.6
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Brain - Putamen (basal ganglia)
Average nTPM: 24.7
Samples: 205

Max nTPM: 45.5
Min nTPM: 8.6
Std nTPM: 7.7
Median nTPM: 25.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 45.5
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 44.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 41.6
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 41.4
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 38.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 37.9
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 37.5
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 37.5
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 37.3
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 37.0
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 36.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 32.9
FF:10164-103B2 76 years, female 32.9
Globus pallidus
Scaled Tags Per Million: 29.7
FF:10175-103C4 60 years, female 33.9
FF:10161-103A8 76 years, female 25.6
Nucleus accumbens
Scaled Tags Per Million: 29.9
FF:10037-101F1 23-56 years, mixed 29.9
Putamen
Scaled Tags Per Million: 42.4
FF:10176-103C5 60 years, female 42.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.7
Pig sample Sample description nTPM
Caudate
nTPM: 28.7
Samples: 4

Max nTPM: 32.8
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 32.0
Sample C Male 32.8
Sample D Male 27.5
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 33.1
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 27.6
Sample C Male 33.1
Sample D Male 29.4
Septum
nTPM: 23.6
Samples: 4

Max nTPM: 25.6
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 25.6
Sample C Male 23.0
Sample D Male 22.9
Ventral pallidum
nTPM: 24.7
Samples: 4

Max nTPM: 27.2
Min nTPM: 21.6
Sample A Female 21.6
Sample B Female 26.7
Sample C Male 27.2
Sample D Male 23.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 61.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 47.7
Samples: 4

Max nTPM: 49.9
Min nTPM: 45.2
Sample A Male 46.4
Sample B Male 49.9
Sample C Female 45.2
Sample D Female 49.1
Septum
nTPM: 57.2
Samples: 4

Max nTPM: 62.3
Min nTPM: 50.5
Sample A Male 57.6
Sample B Male 62.3
Sample C Female 58.3
Sample D Female 50.5
Ventral forebrain
nTPM: 61.9
Samples: 4

Max nTPM: 66.0
Min nTPM: 58.3
Sample A Male 66.0
Sample B Male 58.3
Sample C Female 62.3
Sample D Female 61.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.2
513022 Antisense, RP_040810_01_B02, Mouse strain C57BL/6J (56 days, male) 7.8
75145998 Antisense, RP_060220_02_B04, Mouse strain C57BL/6J (56 days, male) 6.7
Pallidum
Expression energy: 7.6
513022 Antisense, RP_040810_01_B02, Mouse strain C57BL/6J (56 days, male) 8.1
75145998 Antisense, RP_060220_02_B04, Mouse strain C57BL/6J (56 days, male) 7.1

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.