ABOUTMENU
HELP
NEWS
CAP1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:87.6 nTPM
HPA:87.6 nTPM
GTEx:97.2 nTPM
FANTOM5:151.6 Scaled Tags Per Million
Pig:101.1 nTPM
Mouse:109.3 nTPM
Allen mouse:7.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 87.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 78.0
2411 Female, age 72, unknown 82.0
2019 Male, age 18, unknown 81.5
1870 Female, age 42, unknown 81.0
2666 Male, age 74, left hemisphere 79.9
2828 Female, age 72, unknown 78.9
1830 Male, age 51, unknown 78.7
1833 Male, age 53, unknown 78.4
1827 Male, age 72, unknown 77.0
2219 Male, age 76, both hemispheres 72.9
2586 Male, age 75, left hemisphere 69.3
Dorsal raphe nucleus
nTPM: 79.4
2750 Male, age 76, both hemispheres 84.7
2298 Female, age 72, unknown 80.6
1828 Male, age 53, unknown 79.7
2016 Female, age 72, unknown 76.1
2047 Male, age 72, unknown 75.9
Inferior colliculus
nTPM: 72.7
2097 Female, age 72, unknown 77.2
1890 Male, age 53, unknown 75.5
1848 Female, age 42, unknown 71.4
2849 Male, age 72, unknown 66.7
Median raphe nucleus
nTPM: 82.0
2220 Male, age 76, midline 82.0
Pedunculopontine tegmental nucleus
nTPM: 84.3
2338 Male, age 61, both hemispheres 91.3
2334 Male, age 80, both hemispheres 85.7
1921 Female, age 85, both hemispheres 76.0
Periaquaductal grey, anterior
nTPM: 77.9
1947 Male, age 18, unknown 82.5
2502 Female, age 75, unknown 76.2
1795 Male, age 51, unknown 75.0
Periaquaductal grey, dorsal
nTPM: 71.7
1831 Male, age 72, unknown 73.8
2850 Male, age 76, both hemispheres 73.5
2464 Female, age 72, unknown 71.6
1840 Male, age 53, unknown 67.8
Periaquaductal grey, lateral
nTPM: 73.2
2272 Male, age 74, both hemispheres 76.3
2053 Male, age 18, unknown 72.2
2140 Male, age 76, both hemispheres 71.0
Pretectal area
nTPM: 77.0
1817 Female, age 42, unknown 82.3
2007 Male, age 72, unknown 80.5
1815 Male, age 53, unknown 79.4
1944 Female, age 72, unknown 78.0
1816 Male, age 51, unknown 77.5
2316 Male, age 76, right hemisphere 76.9
2224 Female, age 72, unknown 75.8
2273 Male, age 74, both hemispheres 75.5
2407 Male, age 75, both hemispheres 74.6
2667 Female, age 75, unknown 74.1
2825 Male, age 18, unknown 72.8
Red nucleus
nTPM: 82.5
1821 Female, age 72, unknown 92.4
1904 Male, age 53, unknown 87.3
1865 Male, age 51, unknown 86.7
2725 Female, age 75, unknown 85.3
1954 Female, age 42, unknown 84.3
2785 Male, age 18, unknown 82.7
2503 Female, age 72, unknown 81.9
2769 Male, age 72, unknown 81.9
2227 Male, age 72, unknown 81.7
2823 Male, age 76, right hemisphere 80.6
2584 Male, age 75, left hemisphere 73.3
2588 Male, age 74, left hemisphere 72.4
Substantia nigra
nTPM: 87.6
1916 Female, age 42, unknown 100.3
1851 Male, age 51, unknown 93.7
2241 Male, age 72, unknown 92.4
2409 Female, age 72, unknown 87.2
2590 Female, age 75, unknown 86.4
2699 Male, age 18, unknown 85.0
2665 Male, age 74, both hemispheres 84.9
1941 Male, age 53, unknown 82.6
1889 Female, age 72, unknown 82.2
2583 Male, age 75, right hemisphere 81.4
Superior colliculus
nTPM: 76.5
2587 Male, age 74, left hemisphere 83.8
1913 Female, age 42, unknown 81.0
2668 Female, age 75, unknown 78.9
1995 Male, age 72, unknown 78.5
1796 Male, age 53, unknown 77.3
2261 Male, age 18, unknown 75.3
1895 Male, age 76, right hemisphere 75.1
2087 Female, age 72, unknown 75.1
1839 Male, age 51, unknown 72.9
2664 Male, age 75, both hemispheres 67.3
Ventral tegmental area
nTPM: 85.8
1915 Female, age 42, unknown 89.8
2410 Female, age 72, unknown 88.6
2223 Female, age 72, unknown 87.1
2218 Male, age 76, both hemispheres 86.1
2021 Male, age 53, unknown 81.7
1942 Male, age 51, unknown 81.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 97.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 97.2
Samples: 139

Max nTPM: 146.6
Min nTPM: 65.8
Std nTPM: 15.8
Median nTPM: 94.6
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 146.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 135.0
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 133.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 132.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 131.9
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 127.4
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 126.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 126.6
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 123.6
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 123.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 121.4
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 151.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 151.6
FF:10158-103A5 76 years, female 151.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.1
Pig sample Sample description nTPM
Midbrain
nTPM: 101.2
Samples: 4

Max nTPM: 148.5
Min nTPM: 72.0
Sample A Female 148.5
Sample B Female 87.3
Sample C Male 96.8
Sample D Male 72.0
Periaqueductal gray
nTPM: 75.0
Samples: 3

Max nTPM: 81.1
Min nTPM: 69.1
Sample B Female 74.7
Sample C Male 81.1
Sample D Male 69.1
Substantia nigra
nTPM: 100.7
Samples: 4

Max nTPM: 118.5
Min nTPM: 88.7
Sample A Female 118.5
Sample B Female 92.2
Sample C Male 103.3
Sample D Male 88.7
Superior colliculi
nTPM: 98.4
Samples: 4

Max nTPM: 108.9
Min nTPM: 85.6
Sample A Female 107.3
Sample B Female 85.6
Sample C Male 108.9
Sample D Male 91.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.3
Samples: 4

Max nTPM: 115.6
Min nTPM: 105.0
Sample A Male 105.0
Sample B Male 106.6
Sample C Female 115.6
Sample D Female 110.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.8
323396 Antisense, RP_040617_01_A03, Mouse strain C57BL/6J (56 days, male) 8.1
76081921 Antisense, RP_060626_01_A01, Mouse strain C57BL/6J (56 days, male) 7.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.