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SH3BP5
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:23.3 nTPM
HPA:23.3 nTPM
GTEx:39.1 nTPM
FANTOM5:60.6 Scaled Tags Per Million
Pig:27.0 nTPM
Mouse:84.3 nTPM
Allen mouse:3.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA036445
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 23.3
Sample id Sample description nTPM
Hippocampus
nTPM: 19.3
1855 Male, age 76, left hemisphere 23.7
1898 Male, age 80, left hemisphere 20.3
2148 Female, age 91, left hemisphere 19.1
1911 Female, age 85, right hemisphere 19.0
2621 Female, age 67, right hemisphere 17.5
2529 Female, age 94, left hemisphere 16.5
Dentate gyrus
nTPM: 22.0
2531 Female, age 67, both hemispheres 26.4
2530 Female, age 94, left hemisphere 25.3
2010 Male, age 76, both hemispheres 22.4
1927 Female, age 91, both hemispheres 21.6
2246 Female, age 85, both hemispheres 18.9
2528 Male, age 74, both hemispheres 17.6
Entorhinal gyrus
nTPM: 23.3
2764 Male, age 80, right hemisphere 28.3
2613 Female, age 94, left hemisphere 25.5
1938 Female, age 85, left hemisphere 25.1
1787 Male, age 76, left hemisphere 24.1
2117 Female, age 91, right hemisphere 19.9
2686 Male, age 75, right hemisphere 16.9
Hippocampus, CA1
nTPM: 22.8
2749 Male, age 80, left hemisphere 31.2
2045 Male, age 76, both hemispheres 24.3
1873 Female, age 85, both hemispheres 22.9
2527 Male, age 74, both hemispheres 18.1
2082 Female, age 91, right hemisphere 17.5
Hippocampus, CA2
nTPM: 18.1
1892 Male, age 76, both hemispheres 21.4
1963 Male, age 80, left hemisphere 20.8
2437 Female, age 94, left hemisphere 18.8
2249 Male, age 74, both hemispheres 17.5
1940 Female, age 85, left hemisphere 15.4
2113 Female, age 91, right hemisphere 15.0
Hippocampus, CA3
nTPM: 21.3
2137 Male, age 80, left hemisphere 30.0
2620 Female, age 94, left hemisphere 26.0
1867 Male, age 76, both hemispheres 19.7
1891 Female, age 85, both hemispheres 18.7
2861 Female, age 67, both hemispheres 17.1
2436 Male, age 74, both hemispheres 16.3
Parahippocampal cortex
nTPM: 19.0
2532 Female, age 72, left hemisphere 24.9
1850 Male, age 80, both hemispheres 23.3
2018 Male, age 76, both hemispheres 20.8
1990 Female, age 91, right hemisphere 20.7
1933 Female, age 85, both hemispheres 20.0
2245 Female, age 91, both hemispheres 18.8
2693 Female, age 94, both hemispheres 17.6
2250 Female, age 67, right hemisphere 15.6
2692 Male, age 74, both hemispheres 15.4
2622 Female, age 67, right hemisphere 13.1
Perirhinal gyrus
nTPM: 20.5
2848 Male, age 76, right hemisphere 23.0
1794 Male, age 80, right hemisphere 22.2
1847 Female, age 91, left hemisphere 21.7
2521 Female, age 94, right hemisphere 18.1
1841 Female, age 85, right hemisphere 17.8
Subiculum
nTPM: 19.0
1977 Female, age 85, both hemispheres 23.4
1901 Male, age 80, both hemispheres 22.9
2042 Male, age 76, both hemispheres 20.1
2438 Female, age 94, left hemisphere 18.7
2729 Female, age 91, right hemisphere 16.2
2619 Male, age 74, both hemispheres 12.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 39.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 39.1
Samples: 197

Max nTPM: 78.5
Min nTPM: 13.4
Std nTPM: 12.0
Median nTPM: 38.5
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 78.5
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 76.4
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 68.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 65.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 64.6
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 63.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 60.3
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 60.0
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 59.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 59.5
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 58.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 60.6
FF:10169-103B7 60 years, female 77.4
FF:10153-102I9 76 years, female 43.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 27.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.0
Samples: 4

Max nTPM: 40.9
Min nTPM: 13.1
Sample A Female 40.9
Sample B Female 25.3
Sample C Male 28.8
Sample D Male 13.1
Entorhinal cortex
nTPM: 21.0
Samples: 4

Max nTPM: 24.9
Min nTPM: 18.4
Sample A Female 18.4
Sample B Female 24.9
Sample C Male 19.7
Sample D Male 20.8
Subiculum
nTPM: 19.8
Samples: 4

Max nTPM: 26.6
Min nTPM: 16.0
Sample A Female 26.6
Sample B Female 18.9
Sample C Male 17.7
Sample D Male 16.0
Ventral hippocampus
nTPM: 23.2
Samples: 4

Max nTPM: 28.5
Min nTPM: 14.6
Sample A Female 28.5
Sample B Female 14.6
Sample C Male 24.0
Sample D Male 25.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 84.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 40.6
Samples: 4

Max nTPM: 48.9
Min nTPM: 37.4
Sample A Male 37.4
Sample B Male 38.0
Sample C Female 48.9
Sample D Female 38.1
Hippocampal formation
nTPM: 84.3
Samples: 4

Max nTPM: 107.3
Min nTPM: 64.4
Sample A Male 64.4
Sample B Male 93.5
Sample C Female 107.3
Sample D Female 71.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.4
68797739 Antisense, RP_050215_01_A08, Mouse strain C57BL/6J (56 days, male) 4.0
70919866 Antisense, RP_050713_02_B12, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
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