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NR1H2
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.3 nTPM
HPA:47.3 nTPM
GTEx:52.0 nTPM
FANTOM5:103.1 Scaled Tags Per Million
Pig:63.9 nTPM
Mouse:17.9 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.3
2586 Male, age 75, left hemisphere 49.9
2828 Female, age 72, unknown 48.1
2666 Male, age 74, left hemisphere 46.9
1827 Male, age 72, unknown 44.7
2019 Male, age 18, unknown 44.0
1870 Female, age 42, unknown 40.8
2411 Female, age 72, unknown 40.6
1833 Male, age 53, unknown 40.4
1830 Male, age 51, unknown 40.3
2219 Male, age 76, both hemispheres 37.3
Dorsal raphe nucleus
nTPM: 40.0
1828 Male, age 53, unknown 41.1
2750 Male, age 76, both hemispheres 40.1
2016 Female, age 72, unknown 40.0
2298 Female, age 72, unknown 39.6
2047 Male, age 72, unknown 39.0
Inferior colliculus
nTPM: 41.2
2097 Female, age 72, unknown 43.0
1848 Female, age 42, unknown 42.1
2849 Male, age 72, unknown 40.1
1890 Male, age 53, unknown 39.5
Median raphe nucleus
nTPM: 38.7
2220 Male, age 76, midline 38.7
Pedunculopontine tegmental nucleus
nTPM: 41.4
2334 Male, age 80, both hemispheres 44.4
2338 Male, age 61, both hemispheres 40.2
1921 Female, age 85, both hemispheres 39.7
Periaquaductal grey, anterior
nTPM: 47.3
2502 Female, age 75, unknown 48.5
1795 Male, age 51, unknown 47.6
1947 Male, age 18, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 39.3
1831 Male, age 72, unknown 42.2
2464 Female, age 72, unknown 40.9
2850 Male, age 76, both hemispheres 38.7
1840 Male, age 53, unknown 35.4
Periaquaductal grey, lateral
nTPM: 40.9
2140 Male, age 76, both hemispheres 41.5
2272 Male, age 74, both hemispheres 41.3
2053 Male, age 18, unknown 39.9
Pretectal area
nTPM: 43.5
2007 Male, age 72, unknown 47.5
1816 Male, age 51, unknown 47.3
1817 Female, age 42, unknown 47.2
1944 Female, age 72, unknown 47.0
1815 Male, age 53, unknown 45.3
2825 Male, age 18, unknown 42.9
2316 Male, age 76, right hemisphere 42.3
2407 Male, age 75, both hemispheres 42.3
2667 Female, age 75, unknown 41.1
2273 Male, age 74, both hemispheres 39.1
2224 Female, age 72, unknown 37.0
Red nucleus
nTPM: 43.7
2785 Male, age 18, unknown 47.4
2227 Male, age 72, unknown 45.3
2584 Male, age 75, left hemisphere 45.2
2769 Male, age 72, unknown 45.1
1954 Female, age 42, unknown 43.6
2503 Female, age 72, unknown 43.5
2823 Male, age 76, right hemisphere 43.5
2588 Male, age 74, left hemisphere 43.0
1904 Male, age 53, unknown 42.6
1865 Male, age 51, unknown 42.4
2725 Female, age 75, unknown 42.2
1821 Female, age 72, unknown 40.2
Substantia nigra
nTPM: 41.4
1941 Male, age 53, unknown 46.4
2665 Male, age 74, both hemispheres 45.7
2583 Male, age 75, right hemisphere 43.7
1916 Female, age 42, unknown 43.2
2590 Female, age 75, unknown 42.7
1889 Female, age 72, unknown 42.4
1851 Male, age 51, unknown 41.7
2699 Male, age 18, unknown 38.5
2409 Female, age 72, unknown 37.4
2241 Male, age 72, unknown 32.4
Superior colliculus
nTPM: 43.9
1796 Male, age 53, unknown 47.6
2087 Female, age 72, unknown 45.7
2664 Male, age 75, both hemispheres 45.4
1995 Male, age 72, unknown 45.3
2261 Male, age 18, unknown 45.2
2668 Female, age 75, unknown 44.8
1913 Female, age 42, unknown 43.6
1839 Male, age 51, unknown 42.2
2587 Male, age 74, left hemisphere 41.1
1895 Male, age 76, right hemisphere 38.3
Ventral tegmental area
nTPM: 40.3
2410 Female, age 72, unknown 42.3
1942 Male, age 51, unknown 41.4
1915 Female, age 42, unknown 40.9
2218 Male, age 76, both hemispheres 40.2
2021 Male, age 53, unknown 38.9
2223 Female, age 72, unknown 38.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.0
Samples: 139

Max nTPM: 84.2
Min nTPM: 27.5
Std nTPM: 9.4
Median nTPM: 51.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 84.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 82.6
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 80.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 77.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 76.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 76.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 70.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 66.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 66.2
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 64.8
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.1
FF:10158-103A5 76 years, female 103.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.9
Pig sample Sample description nTPM
Midbrain
nTPM: 58.0
Samples: 4

Max nTPM: 69.2
Min nTPM: 50.9
Sample A Female 69.2
Sample B Female 50.9
Sample C Male 58.7
Sample D Male 53.3
Periaqueductal gray
nTPM: 44.3
Samples: 3

Max nTPM: 48.6
Min nTPM: 41.6
Sample B Female 42.8
Sample C Male 48.6
Sample D Male 41.6
Substantia nigra
nTPM: 51.1
Samples: 4

Max nTPM: 61.2
Min nTPM: 45.1
Sample A Female 61.2
Sample B Female 45.1
Sample C Male 51.1
Sample D Male 47.1
Superior colliculi
nTPM: 63.9
Samples: 4

Max nTPM: 75.9
Min nTPM: 52.1
Sample A Female 75.9
Sample B Female 52.1
Sample C Male 64.5
Sample D Male 62.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 21.5
Min nTPM: 15.8
Sample A Male 21.5
Sample B Male 17.5
Sample C Female 15.8
Sample D Female 16.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
72182970 Antisense, RP_051005_02_G03, Mouse strain C57BL/6J (56 days, male) 1.9
70920057 Antisense, RP_050713_02_F02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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