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EFR3A
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:29.5 nTPM
HPA:29.5 nTPM
GTEx:24.2 nTPM
FANTOM5:133.4 Scaled Tags Per Million
Pig:72.0 nTPM
Mouse:86.4 nTPM
Allen mouse:9.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022859Antibody HPA023092Antibody HPA023402
Glial cells Not detectedLowNot detected
Neuronal cells Not detectedNot detectedMedium






HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 29.5
Sample id Sample description nTPM
Hippocampus
nTPM: 19.3
1898 Male, age 80, left hemisphere 40.7
2148 Female, age 91, left hemisphere 20.2
1911 Female, age 85, right hemisphere 16.9
2621 Female, age 67, right hemisphere 15.9
2529 Female, age 94, left hemisphere 11.6
1855 Male, age 76, left hemisphere 10.8
Dentate gyrus
nTPM: 19.3
1927 Female, age 91, both hemispheres 42.5
2246 Female, age 85, both hemispheres 20.8
2010 Male, age 76, both hemispheres 17.5
2528 Male, age 74, both hemispheres 14.7
2531 Female, age 67, both hemispheres 10.6
2530 Female, age 94, left hemisphere 9.7
Entorhinal gyrus
nTPM: 24.8
1938 Female, age 85, left hemisphere 42.7
2613 Female, age 94, left hemisphere 28.9
2764 Male, age 80, right hemisphere 27.3
1787 Male, age 76, left hemisphere 20.6
2117 Female, age 91, right hemisphere 14.7
2686 Male, age 75, right hemisphere 14.7
Hippocampus, CA1
nTPM: 28.8
2749 Male, age 80, left hemisphere 68.3
1873 Female, age 85, both hemispheres 27.1
2527 Male, age 74, both hemispheres 23.5
2082 Female, age 91, right hemisphere 14.0
2045 Male, age 76, both hemispheres 11.0
Hippocampus, CA2
nTPM: 24.9
1892 Male, age 76, both hemispheres 50.4
1963 Male, age 80, left hemisphere 33.5
2437 Female, age 94, left hemisphere 21.0
2249 Male, age 74, both hemispheres 17.7
2113 Female, age 91, right hemisphere 13.9
1940 Female, age 85, left hemisphere 12.9
Hippocampus, CA3
nTPM: 29.5
2137 Male, age 80, left hemisphere 63.9
1867 Male, age 76, both hemispheres 36.5
1891 Female, age 85, both hemispheres 27.8
2436 Male, age 74, both hemispheres 24.0
2620 Female, age 94, left hemisphere 17.6
2861 Female, age 67, both hemispheres 7.0
Parahippocampal cortex
nTPM: 20.2
1850 Male, age 80, both hemispheres 34.3
1990 Female, age 91, right hemisphere 34.2
2245 Female, age 91, both hemispheres 21.2
1933 Female, age 85, both hemispheres 20.0
2250 Female, age 67, right hemisphere 18.1
2692 Male, age 74, both hemispheres 17.8
2532 Female, age 72, left hemisphere 15.8
2693 Female, age 94, both hemispheres 15.3
2622 Female, age 67, right hemisphere 13.0
2018 Male, age 76, both hemispheres 12.3
Perirhinal gyrus
nTPM: 29.4
1847 Female, age 91, left hemisphere 47.9
1794 Male, age 80, right hemisphere 34.1
1841 Female, age 85, right hemisphere 23.7
2521 Female, age 94, right hemisphere 20.8
2848 Male, age 76, right hemisphere 20.1
Subiculum
nTPM: 24.1
1901 Male, age 80, both hemispheres 41.4
1977 Female, age 85, both hemispheres 35.9
2438 Female, age 94, left hemisphere 26.3
2619 Male, age 74, both hemispheres 18.2
2729 Female, age 91, right hemisphere 12.4
2042 Male, age 76, both hemispheres 10.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.2
Samples: 197

Max nTPM: 85.6
Min nTPM: 6.8
Std nTPM: 12.9
Median nTPM: 21.4
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 85.6
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 77.1
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 70.0
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 68.1
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 60.9
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 60.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 59.7
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 53.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 49.2
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 45.9
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 45.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 133.4
FF:10169-103B7 60 years, female 194.6
FF:10153-102I9 76 years, female 72.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 72.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 67.7
Samples: 4

Max nTPM: 106.2
Min nTPM: 41.5
Sample A Female 68.4
Sample B Female 54.5
Sample C Male 106.2
Sample D Male 41.5
Entorhinal cortex
nTPM: 69.3
Samples: 4

Max nTPM: 81.5
Min nTPM: 60.1
Sample A Female 60.1
Sample B Female 81.5
Sample C Male 64.4
Sample D Male 71.0
Subiculum
nTPM: 72.0
Samples: 4

Max nTPM: 97.1
Min nTPM: 61.8
Sample A Female 97.1
Sample B Female 64.3
Sample C Male 61.8
Sample D Male 64.9
Ventral hippocampus
nTPM: 45.2
Samples: 4

Max nTPM: 52.1
Min nTPM: 41.1
Sample A Female 44.6
Sample B Female 43.1
Sample C Male 41.1
Sample D Male 52.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.4
Samples: 4

Max nTPM: 91.5
Min nTPM: 81.6
Sample A Male 81.6
Sample B Male 86.0
Sample C Female 86.3
Sample D Female 91.5
Hippocampal formation
nTPM: 74.5
Samples: 4

Max nTPM: 77.6
Min nTPM: 70.6
Sample A Male 77.6
Sample B Male 76.4
Sample C Female 70.6
Sample D Female 73.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.8
79568028 Antisense, RP_071204_02_B07, Mouse strain C57BL/6J (56 days, male) 11.1
68442997 Antisense, RP_050111_01_B09, Mouse strain C57BL/6J (56 days, male) 10.3
75749772 Antisense, RP_060518_01_B02, Mouse strain C57BL/6J (56 days, male) 8.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.