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H3-3B
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:241.9 nTPM
HPA:241.9 nTPM
GTEx:344.7 nTPM
FANTOM5:305.4 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 241.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 215.6
1870 Female, age 42, unknown 245.1
2828 Female, age 72, unknown 242.7
2411 Female, age 72, unknown 231.2
1830 Male, age 51, unknown 230.5
1833 Male, age 53, unknown 222.6
2586 Male, age 75, left hemisphere 217.6
1827 Male, age 72, unknown 216.7
2019 Male, age 18, unknown 213.5
2219 Male, age 76, both hemispheres 168.9
2666 Male, age 74, left hemisphere 167.2
Dorsal raphe nucleus
nTPM: 217.3
2298 Female, age 72, unknown 238.6
2016 Female, age 72, unknown 225.3
2750 Male, age 76, both hemispheres 221.0
1828 Male, age 53, unknown 209.0
2047 Male, age 72, unknown 192.6
Inferior colliculus
nTPM: 211.8
1848 Female, age 42, unknown 223.8
1890 Male, age 53, unknown 217.1
2097 Female, age 72, unknown 205.2
2849 Male, age 72, unknown 201.0
Median raphe nucleus
nTPM: 205.6
2220 Male, age 76, midline 205.6
Pedunculopontine tegmental nucleus
nTPM: 223.1
2338 Male, age 61, both hemispheres 233.2
2334 Male, age 80, both hemispheres 220.6
1921 Female, age 85, both hemispheres 215.5
Periaquaductal grey, anterior
nTPM: 217.7
2502 Female, age 75, unknown 230.7
1947 Male, age 18, unknown 213.3
1795 Male, age 51, unknown 209.1
Periaquaductal grey, dorsal
nTPM: 220.5
1831 Male, age 72, unknown 233.5
2850 Male, age 76, both hemispheres 228.6
1840 Male, age 53, unknown 215.0
2464 Female, age 72, unknown 204.8
Periaquaductal grey, lateral
nTPM: 233.4
2272 Male, age 74, both hemispheres 251.0
2140 Male, age 76, both hemispheres 239.5
2053 Male, age 18, unknown 209.7
Pretectal area
nTPM: 214.5
2316 Male, age 76, right hemisphere 252.8
2273 Male, age 74, both hemispheres 252.7
2407 Male, age 75, both hemispheres 231.6
2825 Male, age 18, unknown 223.4
2224 Female, age 72, unknown 220.2
2667 Female, age 75, unknown 211.3
1817 Female, age 42, unknown 208.4
1815 Male, age 53, unknown 206.7
2007 Male, age 72, unknown 199.9
1944 Female, age 72, unknown 179.4
1816 Male, age 51, unknown 173.1
Red nucleus
nTPM: 241.9
2227 Male, age 72, unknown 274.9
1865 Male, age 51, unknown 268.7
2503 Female, age 72, unknown 266.9
2769 Male, age 72, unknown 264.6
1904 Male, age 53, unknown 264.0
2785 Male, age 18, unknown 255.4
1821 Female, age 72, unknown 252.9
1954 Female, age 42, unknown 241.3
2823 Male, age 76, right hemisphere 217.9
2588 Male, age 74, left hemisphere 206.1
2725 Female, age 75, unknown 201.3
2584 Male, age 75, left hemisphere 188.5
Substantia nigra
nTPM: 190.1
2590 Female, age 75, unknown 221.9
2699 Male, age 18, unknown 219.4
1889 Female, age 72, unknown 207.2
1851 Male, age 51, unknown 203.4
1916 Female, age 42, unknown 189.0
2583 Male, age 75, right hemisphere 186.8
2665 Male, age 74, both hemispheres 184.1
1941 Male, age 53, unknown 171.6
2409 Female, age 72, unknown 168.3
2241 Male, age 72, unknown 149.3
Superior colliculus
nTPM: 219.0
1995 Male, age 72, unknown 270.6
1913 Female, age 42, unknown 245.0
1796 Male, age 53, unknown 233.8
2587 Male, age 74, left hemisphere 228.1
1895 Male, age 76, right hemisphere 217.3
1839 Male, age 51, unknown 214.7
2668 Female, age 75, unknown 205.5
2664 Male, age 75, both hemispheres 197.4
2087 Female, age 72, unknown 190.6
2261 Male, age 18, unknown 186.7
Ventral tegmental area
nTPM: 208.3
2410 Female, age 72, unknown 221.4
1915 Female, age 42, unknown 209.2
2223 Female, age 72, unknown 209.1
1942 Male, age 51, unknown 207.6
2218 Male, age 76, both hemispheres 204.2
2021 Male, age 53, unknown 198.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 344.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 344.7
Samples: 139

Max nTPM: 748.0
Min nTPM: 136.2
Std nTPM: 108.8
Median nTPM: 320.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 748.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 744.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 742.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 589.2
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 579.9
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 575.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 562.4
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 551.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 551.3
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 544.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 533.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 305.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 305.4
FF:10158-103A5 76 years, female 305.4

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The Human Protein Atlas

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