Single cell type - CLEC10A - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	CLEC10A
Gene descriptionⁱ Full gene name according to HGNC.	C-type lectin domain containing 10A
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	CD markers
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular,Membrane
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	5

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Macrophages - Immune response (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Group enriched (Langerhans cells, Macrophages)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Immune cell enriched (myeloid DC)
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in many
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Not detected
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Not detected
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Group enriched (Langerhans cells, Macrophages)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

CLEC10A is part of cluster 41 Macrophages - Immune response with confidenceⁱ 1
307 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
CD1E	CD1e molecule	0.9534	41
CD1C	CD1c molecule	0.9528	41
ASCL4	Achaete-scute family bHLH transcription factor 4	0.9463	41
CD1B	CD1b molecule	0.9340	41
FCER1A	Fc fragment of IgE receptor Ia	0.9155	41
FPR3	Formyl peptide receptor 3	0.8977	4
HLA-DQB2	Major histocompatibility complex, class II, DQ beta 2	0.8812	41
CST3	Cystatin C	0.8759	41
CCL13	C-C motif chemokine ligand 13	0.8738	41
HLA-DPB1	Major histocompatibility complex, class II, DP beta 1	0.8738	41
CD1A	CD1a molecule	0.8727	41
HLA-DPA1	Major histocompatibility complex, class II, DP alpha 1	0.8590	41
HLA-DRA	Major histocompatibility complex, class II, DR alpha	0.8485	41
HLA-DRB1	Major histocompatibility complex, class II, DR beta 1	0.8463	41
HLA-DQA2	Major histocompatibility complex, class II, DQ alpha 2	0.8426	41

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	1.1 nTPM
Breast	1.9 nTPM
Adipose tissue	0.3 nTPM

Alveolar cells type 1	3.2 nTPM
Lung	3.2 nTPM

Alveolar cells type 2	3.9 nTPM
Lung	3.9 nTPM

Astrocytes	0.0 nTPM
Brain	0.0 nTPM

B-cells	3.6 nTPM
Colon	30.3 nTPM
Kidney	4.8 nTPM
Adipose tissue	1.0 nTPM
Liver	0.0 nTPM
PBMC	0.0 nTPM
Lymph node	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM
Breast	0.0 nTPM

Dendritic cells	1.7 nTPM
PBMC	4.0 nTPM
Adipose tissue	1.1 nTPM
Breast	0.0 nTPM

Endothelial cells	1.5 nTPM
Skin	14.9 nTPM
Liver	1.8 nTPM
Skeletal muscle	1.0 nTPM
Esophagus	1.0 nTPM
Breast	0.9 nTPM
Heart muscle	0.4 nTPM
Testis	0.3 nTPM
Endometrium	0.1 nTPM
Ovary	0.1 nTPM
Eye	0.0 nTPM
Lung	0.0 nTPM
Placenta	0.0 nTPM
Prostate	0.0 nTPM
Pancreas	0.0 nTPM

Fibroblasts	2.0 nTPM
Skin	12.1 nTPM
Skeletal muscle	2.7 nTPM
Heart muscle	1.6 nTPM
Lung	1.2 nTPM
Adipose tissue	1.2 nTPM
Breast	1.0 nTPM
Placenta	0.8 nTPM
Esophagus	0.5 nTPM
Prostate	0.4 nTPM
Ovary	0.0 nTPM
Stomach	0.0 nTPM

Intestinal goblet cells	0.1 nTPM
Rectum	0.4 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM

Macrophages	213.9 nTPM
Adipose tissue	704.9 nTPM
Testis	593.2 nTPM
Esophagus	229.8 nTPM
Ovary	215.9 nTPM
Endometrium	214.9 nTPM
Pancreas	214.4 nTPM
Skeletal muscle	188.2 nTPM
Breast	187.6 nTPM
Prostate	170.7 nTPM
Kidney	141.4 nTPM
Bone marrow	113.7 nTPM
PBMC	95.5 nTPM
Lung	64.4 nTPM
Spleen	52.9 nTPM
Stomach	20.5 nTPM

Paneth cells	0.0 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM
Rectum	0.0 nTPM

Plasma cells	0.9 nTPM
Adipose tissue	4.5 nTPM
Esophagus	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM
Stomach	0.0 nTPM

Respiratory ciliated cells	0.0 nTPM
Lung	0.0 nTPM
Bronchus	0.0 nTPM

Smooth muscle cells	1.7 nTPM
Skin	11.9 nTPM
Heart muscle	4.3 nTPM
Skeletal muscle	1.2 nTPM
Prostate	0.4 nTPM
Endometrium	0.3 nTPM
Breast	0.3 nTPM
Ovary	0.1 nTPM
Pancreas	0.0 nTPM
Bronchus	0.0 nTPM
Adipose tissue	0.0 nTPM
Esophagus	0.0 nTPM

T-cells	1.6 nTPM
Skin	11.9 nTPM
Lung	10.6 nTPM
Adipose tissue	1.5 nTPM
Skeletal muscle	1.3 nTPM
PBMC	0.9 nTPM
Kidney	0.7 nTPM
Breast	0.6 nTPM
Endometrium	0.1 nTPM
Stomach	0.1 nTPM
Colon	0.0 nTPM
Liver	0.0 nTPM
Prostate	0.0 nTPM
Ovary	0.0 nTPM
Esophagus	0.0 nTPM
Lymph node	0.0 nTPM
Bone marrow	0.0 nTPM
Spleen	0.0 nTPM

Basal keratinocytes	13.3 nTPM
Skin	13.3 nTPM

Excitatory neurons	0.2 nTPM
Brain	0.2 nTPM

Undifferentiated cells	0.0 nTPM
Colon	0.0 nTPM
Small intestine	0.0 nTPM
Rectum	0.0 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC