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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.6 nTPM
HPA:14.6 nTPM
GTEx:12.5 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Pig:24.1 nTPM
Mouse:92.0 nTPM
Allen mouse:3.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 14.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.9
2481 Female, age 94, left hemisphere 15.7
2288 Male, age 75, left hemisphere 14.7
2846 Female, age 79, unknown 14.2
1781 Male, age 74, unknown 13.9
1857 Female, age 85, left hemisphere 13.7
2289 Male, age 61, right hemisphere 13.5
1854 Male, age 80, left hemisphere 13.1
2290 Female, age 72, unknown 12.7
Claustrum
nTPM: 13.4
2392 Female, age 94, both hemispheres 14.6
2198 Male, age 80, both hemispheres 14.4
2284 Female, age 91, both hemispheres 13.8
2645 Female, age 72, unknown 13.7
2491 Male, age 75, both hemispheres 13.4
2196 Female, age 79, unknown 13.3
1956 Male, age 74, unknown 12.7
2568 Male, age 61, both hemispheres 12.5
2292 Female, age 85, both hemispheres 12.4
Globus pallidus, externus
nTPM: 14.6
2772 Female, age 79, unknown 16.6
2395 Male, age 75, both hemispheres 15.4
1996 Male, age 80, right hemisphere 15.2
2567 Female, age 72, unknown 13.4
2646 Male, age 61, right hemisphere 12.2
Globus pallidus, internus
nTPM: 13.5
2483 Female, age 94, right hemisphere 15.2
2287 Male, age 75, right hemisphere 14.2
1818 Male, age 74, unknown 13.7
2037 Male, age 80, right hemisphere 13.7
2778 Female, age 91, both hemispheres 13.4
2111 Female, age 85, right hemisphere 13.2
2566 Female, age 72, unknown 10.8
Nucleus accumbens
nTPM: 14.2
2286 Male, age 75, left hemisphere 16.0
2391 Female, age 94, left hemisphere 15.0
1856 Female, age 91, right hemisphere 14.8
2824 Male, age 61, right hemisphere 14.2
1806 Female, age 85, left hemisphere 13.8
1783 Male, age 74, unknown 13.6
2732 Male, age 80, right hemisphere 13.2
2698 Female, age 72, unknown 12.7
Nucleus basalis of Meynert
nTPM: 13.4
2484 Female, age 94, left hemisphere 14.3
2569 Male, age 61, both hemispheres 13.3
2393 Male, age 80, right hemisphere 13.2
2821 Male, age 75, both hemispheres 12.8
Nucleus of the diagonal band
nTPM: 13.7
1979 Male, age 74, unknown 14.2
1812 Female, age 91, both hemispheres 13.6
2195 Female, age 85, both hemispheres 13.6
2029 Male, age 61, right hemisphere 13.5
2775 Male, age 80, right hemisphere 13.5
Olfactory tubercle
nTPM: 14.3
1846 Male, age 80, right hemisphere 15.4
1998 Female, age 91, both hemispheres 15.2
2487 Female, age 94, left hemisphere 14.0
2856 Male, age 75, right hemisphere 12.8
Putamen
nTPM: 13.1
2482 Female, age 94, left hemisphere 14.6
2466 Female, age 79, unknown 13.8
1937 Female, age 91, right hemisphere 13.3
1838 Male, age 80, right hemisphere 13.1
2489 Female, age 72, unknown 12.7
2647 Male, age 75, left hemisphere 12.6
1829 Male, age 74, unknown 11.8
Septal nuclei
nTPM: 13.8
2031 Female, age 72, unknown 14.6
2394 Male, age 61, left hemisphere 14.5
1960 Male, age 74, unknown 14.2
2059 Female, age 85, both hemispheres 14.1
2629 Female, age 94, right hemisphere 13.4
2009 Female, age 91, both hemispheres 12.9
2199 Male, age 80, right hemisphere 12.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 12.5
Samples: 246

Max nTPM: 34.9
Min nTPM: 2.9
Std nTPM: 4.6
Median nTPM: 11.7
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 34.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 30.1
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 26.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 23.5
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 23.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 22.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 22.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 21.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 21.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 21.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 11.9
Samples: 246

Max nTPM: 29.2
Min nTPM: 3.0
Std nTPM: 4.3
Median nTPM: 11.4
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 29.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 28.6
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 27.1
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 26.4
GTEX-X585-0011-R6A-SM-46MVJ 50-59 years, male 25.2
GTEX-13NYS-0011-R6b-SM-5MR3R 60-69 years, male 24.0
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 24.0
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 22.0
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 21.2
GTEX-13N2G-0011-R6b-SM-5MR3P 60-69 years, male 21.1
GTEX-1HR9M-0011-R6a-SM-ARU6Z 60-69 years, male 20.2
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Brain - Putamen (basal ganglia)
Average nTPM: 12.0
Samples: 205

Max nTPM: 33.2
Min nTPM: 3.3
Std nTPM: 4.3
Median nTPM: 11.7
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 33.2
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 26.9
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 24.1
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 23.8
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 23.3
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 23.1
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 20.7
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 20.1
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 20.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 19.9
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 19.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.7
FF:10164-103B2 76 years, female 22.7
Globus pallidus
Scaled Tags Per Million: 14.8
FF:10161-103A8 76 years, female 18.6
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 16.0
FF:10037-101F1 23-56 years, mixed 16.0
Putamen
Scaled Tags Per Million: 18.5
FF:10176-103C5 60 years, female 18.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 24.1
Pig sample Sample description nTPM
Caudate
nTPM: 21.2
Samples: 4

Max nTPM: 24.7
Min nTPM: 19.5
Sample A Female 20.5
Sample B Female 20.0
Sample C Male 24.7
Sample D Male 19.5
Putamen
nTPM: 24.2
Samples: 4

Max nTPM: 32.9
Min nTPM: 16.9
Sample A Female 22.8
Sample B Female 16.9
Sample C Male 32.9
Sample D Male 24.1
Septum
nTPM: 22.5
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.5
Sample A Female 25.8
Sample B Female 19.5
Sample C Male 24.6
Sample D Male 20.0
Ventral pallidum
nTPM: 20.0
Samples: 4

Max nTPM: 21.4
Min nTPM: 18.2
Sample A Female 19.8
Sample B Female 21.4
Sample C Male 20.4
Sample D Male 18.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 92.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 70.8
Samples: 4

Max nTPM: 74.0
Min nTPM: 67.1
Sample A Male 67.1
Sample B Male 70.3
Sample C Female 74.0
Sample D Female 71.6
Septum
nTPM: 92.1
Samples: 4

Max nTPM: 98.9
Min nTPM: 86.6
Sample A Male 86.6
Sample B Male 98.9
Sample C Female 91.8
Sample D Female 90.9
Ventral forebrain
nTPM: 83.8
Samples: 4

Max nTPM: 92.4
Min nTPM: 76.6
Sample A Male 76.6
Sample B Male 85.6
Sample C Female 92.4
Sample D Female 80.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.1
69102926 Antisense, RP_050316_01_H07, Mouse strain C57BL/6J (56 days, male) 2.1
Pallidum
Expression energy: 3.2
69102926 Antisense, RP_050316_01_H07, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.