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MTSS2
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:296.0 nTPM
HPA:296.0 nTPM
GTEx:269.1 nTPM
FANTOM5:539.6 Scaled Tags Per Million
Pig:107.7 nTPM
Mouse:84.1 nTPM
Allen mouse:6.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA048531Antibody HPA066469
Glial cells MediumLow
Neuronal cells Not detectedNot detected





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 296.0
Sample id Sample description nTPM
Hippocampus
nTPM: 296.0
2529 Female, age 94, left hemisphere 385.2
2621 Female, age 67, right hemisphere 295.3
2148 Female, age 91, left hemisphere 295.0
1855 Male, age 76, left hemisphere 279.5
1911 Female, age 85, right hemisphere 275.7
1898 Male, age 80, left hemisphere 245.3
Dentate gyrus
nTPM: 283.2
2530 Female, age 94, left hemisphere 379.5
2010 Male, age 76, both hemispheres 291.0
2531 Female, age 67, both hemispheres 289.7
2528 Male, age 74, both hemispheres 283.6
2246 Female, age 85, both hemispheres 278.7
1927 Female, age 91, both hemispheres 176.6
Entorhinal gyrus
nTPM: 238.4
2117 Female, age 91, right hemisphere 286.3
2686 Male, age 75, right hemisphere 281.5
1787 Male, age 76, left hemisphere 253.2
1938 Female, age 85, left hemisphere 211.9
2764 Male, age 80, right hemisphere 209.6
2613 Female, age 94, left hemisphere 187.7
Hippocampus, CA1
nTPM: 230.5
2527 Male, age 74, both hemispheres 300.2
1873 Female, age 85, both hemispheres 269.2
2082 Female, age 91, right hemisphere 238.4
2045 Male, age 76, both hemispheres 212.6
2749 Male, age 80, left hemisphere 132.2
Hippocampus, CA2
nTPM: 231.0
2437 Female, age 94, left hemisphere 284.9
1940 Female, age 85, left hemisphere 268.4
2113 Female, age 91, right hemisphere 257.0
2249 Male, age 74, both hemispheres 216.8
1963 Male, age 80, left hemisphere 208.2
1892 Male, age 76, both hemispheres 150.8
Hippocampus, CA3
nTPM: 231.5
2861 Female, age 67, both hemispheres 417.7
2620 Female, age 94, left hemisphere 270.1
1891 Female, age 85, both hemispheres 243.6
2436 Male, age 74, both hemispheres 174.8
1867 Male, age 76, both hemispheres 158.4
2137 Male, age 80, left hemisphere 124.4
Parahippocampal cortex
nTPM: 215.6
2692 Male, age 74, both hemispheres 313.7
2622 Female, age 67, right hemisphere 265.5
2245 Female, age 91, both hemispheres 249.8
2018 Male, age 76, both hemispheres 231.1
2532 Female, age 72, left hemisphere 207.0
1933 Female, age 85, both hemispheres 199.2
2250 Female, age 67, right hemisphere 183.7
1990 Female, age 91, right hemisphere 183.2
1850 Male, age 80, both hemispheres 164.8
2693 Female, age 94, both hemispheres 157.9
Perirhinal gyrus
nTPM: 166.2
1847 Female, age 91, left hemisphere 183.7
1794 Male, age 80, right hemisphere 171.7
2848 Male, age 76, right hemisphere 165.2
2521 Female, age 94, right hemisphere 162.4
1841 Female, age 85, right hemisphere 148.0
Subiculum
nTPM: 260.7
2619 Male, age 74, both hemispheres 339.3
2729 Female, age 91, right hemisphere 287.7
2438 Female, age 94, left hemisphere 283.8
2042 Male, age 76, both hemispheres 264.8
1901 Male, age 80, both hemispheres 196.3
1977 Female, age 85, both hemispheres 192.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 269.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 269.1
Samples: 197

Max nTPM: 641.9
Min nTPM: 111.5
Std nTPM: 92.1
Median nTPM: 256.5
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 641.9
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 607.7
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 502.5
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 493.6
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 464.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 464.5
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 464.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 451.2
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 444.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 433.0
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 433.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 539.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 539.6
FF:10153-102I9 76 years, female 816.7
FF:10169-103B7 60 years, female 262.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 107.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 82.7
Samples: 4

Max nTPM: 92.9
Min nTPM: 71.9
Sample A Female 90.9
Sample B Female 71.9
Sample C Male 92.9
Sample D Male 74.9
Entorhinal cortex
nTPM: 96.0
Samples: 4

Max nTPM: 110.8
Min nTPM: 80.4
Sample A Female 103.3
Sample B Female 80.4
Sample C Male 110.8
Sample D Male 89.4
Subiculum
nTPM: 107.7
Samples: 4

Max nTPM: 136.3
Min nTPM: 94.7
Sample A Female 136.3
Sample B Female 94.7
Sample C Male 104.9
Sample D Male 94.8
Ventral hippocampus
nTPM: 99.3
Samples: 4

Max nTPM: 139.1
Min nTPM: 79.2
Sample A Female 94.2
Sample B Female 79.2
Sample C Male 139.1
Sample D Male 84.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 84.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 84.1
Samples: 4

Max nTPM: 92.0
Min nTPM: 79.1
Sample A Male 82.2
Sample B Male 79.1
Sample C Female 83.1
Sample D Female 92.0
Hippocampal formation
nTPM: 72.1
Samples: 4

Max nTPM: 83.2
Min nTPM: 58.4
Sample A Male 75.8
Sample B Male 70.8
Sample C Female 58.4
Sample D Female 83.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.6
77332715 Antisense, RP_070116_02_B11, Mouse strain C57BL/6J (56 days, male) 6.7
69816494 Antisense, RP_050510_01_C01, Mouse strain C57BL/6J (56 days, male) 6.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.