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BTBD3
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: Low
RNA expressioni
Consensus:79.6 nTPM
HPA:79.6 nTPM
GTEx:53.0 nTPM
FANTOM5:411.8 Scaled Tags Per Million
Pig:82.0 nTPM
Mouse:127.1 nTPM
Allen mouse:8.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041424Antibody HPA042048
Glial cells HighNot detected
Neuronal cells LowHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 79.6
Sample id Sample description nTPM
Hippocampus
nTPM: 64.1
2148 Female, age 91, left hemisphere 87.3
1898 Male, age 80, left hemisphere 78.1
1855 Male, age 76, left hemisphere 70.1
1911 Female, age 85, right hemisphere 66.0
2621 Female, age 67, right hemisphere 61.0
2529 Female, age 94, left hemisphere 22.2
Dentate gyrus
nTPM: 73.1
1927 Female, age 91, both hemispheres 121.3
2010 Male, age 76, both hemispheres 93.3
2531 Female, age 67, both hemispheres 88.5
2246 Female, age 85, both hemispheres 56.3
2530 Female, age 94, left hemisphere 40.9
2528 Male, age 74, both hemispheres 38.5
Entorhinal gyrus
nTPM: 24.1
2117 Female, age 91, right hemisphere 31.6
1938 Female, age 85, left hemisphere 30.9
1787 Male, age 76, left hemisphere 23.8
2613 Female, age 94, left hemisphere 23.1
2764 Male, age 80, right hemisphere 21.2
2686 Male, age 75, right hemisphere 13.9
Hippocampus, CA1
nTPM: 79.6
2045 Male, age 76, both hemispheres 122.2
2749 Male, age 80, left hemisphere 120.7
1873 Female, age 85, both hemispheres 100.8
2527 Male, age 74, both hemispheres 32.9
2082 Female, age 91, right hemisphere 21.4
Hippocampus, CA2
nTPM: 50.5
1892 Male, age 76, both hemispheres 93.6
1963 Male, age 80, left hemisphere 92.8
2437 Female, age 94, left hemisphere 34.4
1940 Female, age 85, left hemisphere 28.6
2249 Male, age 74, both hemispheres 28.2
2113 Female, age 91, right hemisphere 25.3
Hippocampus, CA3
nTPM: 71.2
2137 Male, age 80, left hemisphere 96.3
2620 Female, age 94, left hemisphere 94.2
1891 Female, age 85, both hemispheres 73.2
1867 Male, age 76, both hemispheres 72.0
2861 Female, age 67, both hemispheres 61.4
2436 Male, age 74, both hemispheres 30.0
Parahippocampal cortex
nTPM: 24.6
2245 Female, age 91, both hemispheres 43.7
2693 Female, age 94, both hemispheres 32.2
2018 Male, age 76, both hemispheres 26.3
1850 Male, age 80, both hemispheres 25.8
2692 Male, age 74, both hemispheres 24.9
1933 Female, age 85, both hemispheres 24.6
1990 Female, age 91, right hemisphere 23.1
2250 Female, age 67, right hemisphere 20.9
2532 Female, age 72, left hemisphere 20.1
2622 Female, age 67, right hemisphere 4.7
Perirhinal gyrus
nTPM: 29.0
1847 Female, age 91, left hemisphere 36.5
2521 Female, age 94, right hemisphere 33.8
1794 Male, age 80, right hemisphere 31.0
1841 Female, age 85, right hemisphere 24.5
2848 Male, age 76, right hemisphere 19.3
Subiculum
nTPM: 42.3
1901 Male, age 80, both hemispheres 66.1
2729 Female, age 91, right hemisphere 51.5
1977 Female, age 85, both hemispheres 48.0
2042 Male, age 76, both hemispheres 42.8
2438 Female, age 94, left hemisphere 28.6
2619 Male, age 74, both hemispheres 16.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 53.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 53.0
Samples: 197

Max nTPM: 151.4
Min nTPM: 6.8
Std nTPM: 23.8
Median nTPM: 48.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 151.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 129.2
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 128.9
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 119.3
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 115.8
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 108.1
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 107.7
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 104.7
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 104.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 101.9
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 101.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 411.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 411.8
FF:10169-103B7 60 years, female 599.5
FF:10153-102I9 76 years, female 224.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 82.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 82.0
Samples: 4

Max nTPM: 94.8
Min nTPM: 60.4
Sample A Female 94.8
Sample B Female 89.0
Sample C Male 60.4
Sample D Male 83.9
Entorhinal cortex
nTPM: 54.0
Samples: 4

Max nTPM: 74.5
Min nTPM: 39.1
Sample A Female 56.8
Sample B Female 74.5
Sample C Male 45.7
Sample D Male 39.1
Subiculum
nTPM: 51.0
Samples: 4

Max nTPM: 56.7
Min nTPM: 45.3
Sample A Female 53.9
Sample B Female 45.3
Sample C Male 56.7
Sample D Male 48.1
Ventral hippocampus
nTPM: 71.6
Samples: 4

Max nTPM: 94.8
Min nTPM: 59.3
Sample A Female 68.8
Sample B Female 59.3
Sample C Male 63.5
Sample D Male 94.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 127.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 83.5
Samples: 4

Max nTPM: 97.0
Min nTPM: 67.6
Sample A Male 97.0
Sample B Male 75.5
Sample C Female 94.0
Sample D Female 67.6
Hippocampal formation
nTPM: 127.1
Samples: 4

Max nTPM: 137.3
Min nTPM: 115.9
Sample A Male 128.9
Sample B Male 126.3
Sample C Female 137.3
Sample D Female 115.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 8.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 8.2
68637915 Antisense, RP_050126_01_H06, Mouse strain C57BL/6J (56 days, male) 10.0
71016618 Antisense, RP_050725_03_A08, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.