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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: Medium
RNA expressioni
Consensus:4.9 nTPM
HPA:4.9 nTPM
GTEx:2.5 nTPM
FANTOM5:12.6 Scaled Tags Per Million
Pig:2.9 nTPM
Mouse:12.2 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA069119
Glial cells High
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 4.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 4.9
2288 Male, age 75, left hemisphere 5.2
2481 Female, age 94, left hemisphere 5.0
2290 Female, age 72, unknown 4.9
2846 Female, age 79, unknown 4.9
1857 Female, age 85, left hemisphere 4.8
1781 Male, age 74, unknown 4.7
1854 Male, age 80, left hemisphere 4.7
2289 Male, age 61, right hemisphere 4.7
Claustrum
nTPM: 4.7
2491 Male, age 75, both hemispheres 4.9
2292 Female, age 85, both hemispheres 4.8
2392 Female, age 94, both hemispheres 4.8
1956 Male, age 74, unknown 4.7
2198 Male, age 80, both hemispheres 4.7
2568 Male, age 61, both hemispheres 4.7
2645 Female, age 72, unknown 4.7
2284 Female, age 91, both hemispheres 4.6
2196 Female, age 79, unknown 4.3
Globus pallidus, externus
nTPM: 4.6
1996 Male, age 80, right hemisphere 5.2
2772 Female, age 79, unknown 4.9
2646 Male, age 61, right hemisphere 4.8
2567 Female, age 72, unknown 4.2
2395 Male, age 75, both hemispheres 4.0
Globus pallidus, internus
nTPM: 4.9
2566 Female, age 72, unknown 5.2
2483 Female, age 94, right hemisphere 5.1
2037 Male, age 80, right hemisphere 4.9
2111 Female, age 85, right hemisphere 4.9
2287 Male, age 75, right hemisphere 4.9
1818 Male, age 74, unknown 4.7
2778 Female, age 91, both hemispheres 4.6
Nucleus accumbens
nTPM: 4.9
1856 Female, age 91, right hemisphere 5.2
1806 Female, age 85, left hemisphere 5.1
2286 Male, age 75, left hemisphere 4.9
2698 Female, age 72, unknown 4.9
2732 Male, age 80, right hemisphere 4.9
1783 Male, age 74, unknown 4.7
2824 Male, age 61, right hemisphere 4.7
2391 Female, age 94, left hemisphere 4.6
Nucleus basalis of Meynert
nTPM: 4.6
2569 Male, age 61, both hemispheres 4.8
2393 Male, age 80, right hemisphere 4.7
2484 Female, age 94, left hemisphere 4.6
2821 Male, age 75, both hemispheres 4.3
Nucleus of the diagonal band
nTPM: 4.8
1979 Male, age 74, unknown 5.1
1812 Female, age 91, both hemispheres 4.7
2195 Female, age 85, both hemispheres 4.7
2775 Male, age 80, right hemisphere 4.7
2029 Male, age 61, right hemisphere 4.6
Olfactory tubercle
nTPM: 4.6
1846 Male, age 80, right hemisphere 4.9
2487 Female, age 94, left hemisphere 4.6
1998 Female, age 91, both hemispheres 4.5
2856 Male, age 75, right hemisphere 4.4
Putamen
nTPM: 4.7
1937 Female, age 91, right hemisphere 5.2
2466 Female, age 79, unknown 5.0
2482 Female, age 94, left hemisphere 4.9
1838 Male, age 80, right hemisphere 4.6
1829 Male, age 74, unknown 4.5
2647 Male, age 75, left hemisphere 4.5
2489 Female, age 72, unknown 4.4
Septal nuclei
nTPM: 4.8
2394 Male, age 61, left hemisphere 5.2
1960 Male, age 74, unknown 4.9
2059 Female, age 85, both hemispheres 4.9
2199 Male, age 80, right hemisphere 4.8
2031 Female, age 72, unknown 4.7
2629 Female, age 94, right hemisphere 4.6
2009 Female, age 91, both hemispheres 4.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 2.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 2.4
Samples: 246

Max nTPM: 5.7
Min nTPM: 0.5
Std nTPM: 0.7
Median nTPM: 2.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 5.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 4.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 3.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 3.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 3.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 3.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 3.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 3.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 3.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 3.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 3.6
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 2.5
Samples: 246

Max nTPM: 6.0
Min nTPM: 0.0
Std nTPM: 0.8
Median nTPM: 2.5
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 6.0
GTEX-ZDXO-0011-R6a-SM-4WWCT 60-69 years, male 4.8
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 4.4
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 4.3
GTEX-1GN73-0011-R6b-SM-CJI2T 60-69 years, male 4.1
GTEX-12ZZX-0011-R6a-SM-5HL8L 40-49 years, female 4.0
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 4.0
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 4.0
GTEX-15CHQ-0011-R6b-SM-69LOX 60-69 years, male 3.9
GTEX-WZTO-0011-R6B-SM-4E3J6 40-49 years, male 3.9
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 3.9
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Brain - Putamen (basal ganglia)
Average nTPM: 2.3
Samples: 205

Max nTPM: 6.4
Min nTPM: 0.3
Std nTPM: 0.8
Median nTPM: 2.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 6.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 5.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 4.5
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 4.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 4.0
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 4.0
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 4.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 3.8
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 3.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 3.7
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 3.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 12.6
FF:10164-103B2 76 years, female 12.6
Globus pallidus
Scaled Tags Per Million: 6.1
FF:10161-103A8 76 years, female 6.8
FF:10175-103C4 60 years, female 5.5
Nucleus accumbens
Scaled Tags Per Million: 8.4
FF:10037-101F1 23-56 years, mixed 8.4
Putamen
Scaled Tags Per Million: 9.0
FF:10176-103C5 60 years, female 9.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 2.9
Pig sample Sample description nTPM
Caudate
nTPM: 2.1
Samples: 4

Max nTPM: 2.3
Min nTPM: 1.9
Sample A Female 1.9
Sample B Female 2.3
Sample C Male 2.0
Sample D Male 2.0
Putamen
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.0
Sample A Female 3.4
Sample B Female 2.0
Sample C Male 2.7
Sample D Male 2.4
Septum
nTPM: 3.0
Samples: 4

Max nTPM: 3.2
Min nTPM: 2.8
Sample A Female 3.0
Sample B Female 2.8
Sample C Male 3.2
Sample D Male 2.8
Ventral pallidum
nTPM: 2.8
Samples: 4

Max nTPM: 3.6
Min nTPM: 1.8
Sample A Female 1.8
Sample B Female 3.2
Sample C Male 3.6
Sample D Male 2.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 12.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 10.4
Samples: 4

Max nTPM: 12.8
Min nTPM: 8.3
Sample A Male 9.1
Sample B Male 12.8
Sample C Female 11.2
Sample D Female 8.3
Septum
nTPM: 12.2
Samples: 4

Max nTPM: 13.6
Min nTPM: 11.2
Sample A Male 12.5
Sample B Male 11.5
Sample C Female 13.6
Sample D Female 11.2
Ventral forebrain
nTPM: 10.8
Samples: 4

Max nTPM: 11.7
Min nTPM: 10.1
Sample A Male 11.0
Sample B Male 10.4
Sample C Female 11.7
Sample D Female 10.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
532669 Antisense, RP_040825_01_C04, Mouse strain C57BL/6J (56 days, male) 0.5
Pallidum
Expression energy: 0.6
532669 Antisense, RP_040825_01_C04, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.