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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:57.2 nTPM
HPA:57.2 nTPM
GTEx:63.2 nTPM
FANTOM5:26.4 Scaled Tags Per Million
Pig:12.7 nTPM
Mouse:15.2 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA028136Antibody HPA030518Antibody HPA030520
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedNot detectedMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 57.2
Sample id Sample description nTPM
Hippocampus
nTPM: 55.2
1911 Female, age 85, right hemisphere 57.2
2621 Female, age 67, right hemisphere 56.6
1855 Male, age 76, left hemisphere 56.0
2529 Female, age 94, left hemisphere 55.1
2148 Female, age 91, left hemisphere 54.5
1898 Male, age 80, left hemisphere 52.1
Dentate gyrus
nTPM: 55.3
2246 Female, age 85, both hemispheres 57.2
2530 Female, age 94, left hemisphere 57.2
2531 Female, age 67, both hemispheres 56.6
2010 Male, age 76, both hemispheres 55.2
2528 Male, age 74, both hemispheres 54.0
1927 Female, age 91, both hemispheres 51.5
Entorhinal gyrus
nTPM: 56.1
2686 Male, age 75, right hemisphere 61.3
2613 Female, age 94, left hemisphere 57.7
2117 Female, age 91, right hemisphere 55.3
2764 Male, age 80, right hemisphere 54.8
1787 Male, age 76, left hemisphere 54.5
1938 Female, age 85, left hemisphere 53.0
Hippocampus, CA1
nTPM: 53.9
2527 Male, age 74, both hemispheres 55.2
1873 Female, age 85, both hemispheres 54.2
2045 Male, age 76, both hemispheres 54.1
2749 Male, age 80, left hemisphere 53.3
2082 Female, age 91, right hemisphere 52.8
Hippocampus, CA2
nTPM: 54.3
1940 Female, age 85, left hemisphere 55.0
2249 Male, age 74, both hemispheres 55.0
2437 Female, age 94, left hemisphere 54.6
1892 Male, age 76, both hemispheres 54.0
1963 Male, age 80, left hemisphere 53.6
2113 Female, age 91, right hemisphere 53.6
Hippocampus, CA3
nTPM: 54.1
1891 Female, age 85, both hemispheres 57.3
2861 Female, age 67, both hemispheres 56.1
2620 Female, age 94, left hemisphere 54.0
1867 Male, age 76, both hemispheres 53.2
2436 Male, age 74, both hemispheres 52.4
2137 Male, age 80, left hemisphere 52.0
Parahippocampal cortex
nTPM: 56.5
2532 Female, age 72, left hemisphere 60.1
2692 Male, age 74, both hemispheres 60.0
2622 Female, age 67, right hemisphere 59.7
2245 Female, age 91, both hemispheres 56.5
2693 Female, age 94, both hemispheres 56.4
1850 Male, age 80, both hemispheres 55.6
2018 Male, age 76, both hemispheres 54.7
1990 Female, age 91, right hemisphere 54.5
1933 Female, age 85, both hemispheres 54.4
2250 Female, age 67, right hemisphere 52.9
Perirhinal gyrus
nTPM: 53.2
2848 Male, age 76, right hemisphere 57.1
2521 Female, age 94, right hemisphere 53.0
1841 Female, age 85, right hemisphere 52.5
1794 Male, age 80, right hemisphere 52.0
1847 Female, age 91, left hemisphere 51.4
Subiculum
nTPM: 57.2
2438 Female, age 94, left hemisphere 58.5
2042 Male, age 76, both hemispheres 58.3
1901 Male, age 80, both hemispheres 58.0
2619 Male, age 74, both hemispheres 57.3
1977 Female, age 85, both hemispheres 56.7
2729 Female, age 91, right hemisphere 54.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 63.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 63.2
Samples: 197

Max nTPM: 245.3
Min nTPM: 25.0
Std nTPM: 28.8
Median nTPM: 57.0
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 245.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 207.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 194.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 179.7
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 140.3
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 126.5
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 124.0
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 112.3
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 107.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 104.6
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 103.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 26.4
FF:10153-102I9 76 years, female 27.7
FF:10169-103B7 60 years, female 25.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 11.8
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.5
Sample A Female 12.3
Sample B Female 10.5
Sample C Male 12.1
Sample D Male 12.2
Entorhinal cortex
nTPM: 11.6
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.8
Sample A Female 11.8
Sample B Female 11.9
Sample C Male 10.8
Sample D Male 12.0
Subiculum
nTPM: 12.7
Samples: 4

Max nTPM: 14.0
Min nTPM: 11.9
Sample A Female 14.0
Sample B Female 12.3
Sample C Male 12.4
Sample D Male 11.9
Ventral hippocampus
nTPM: 11.8
Samples: 4

Max nTPM: 12.7
Min nTPM: 10.5
Sample A Female 12.1
Sample B Female 11.8
Sample C Male 12.7
Sample D Male 10.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 15.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 15.2
Samples: 4

Max nTPM: 16.6
Min nTPM: 11.4
Sample A Male 16.6
Sample B Male 16.6
Sample C Female 16.2
Sample D Female 11.4
Hippocampal formation
nTPM: 15.2
Samples: 4

Max nTPM: 17.1
Min nTPM: 13.6
Sample A Male 15.1
Sample B Male 13.6
Sample C Female 17.1
Sample D Female 15.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
70474779 Antisense, RP_050623_01_A02, Mouse strain C57BL/6J (56 days, male) 0.2

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