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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:62.6 nTPM
HPA:62.6 nTPM
GTEx:47.6 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:10.9 nTPM
Mouse:13.1 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA028136Antibody HPA030518Antibody HPA030520
Glial cells Not detectedNot detectedMedium
Neuronal cells Not detectedNot detectedMedium






BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 62.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 54.2
2846 Female, age 79, unknown 56.0
2288 Male, age 75, left hemisphere 55.7
2289 Male, age 61, right hemisphere 54.5
1857 Female, age 85, left hemisphere 54.3
1854 Male, age 80, left hemisphere 53.9
1781 Male, age 74, unknown 53.4
2290 Female, age 72, unknown 52.8
2481 Female, age 94, left hemisphere 52.6
Claustrum
nTPM: 59.3
2292 Female, age 85, both hemispheres 64.1
2568 Male, age 61, both hemispheres 60.7
1956 Male, age 74, unknown 60.5
2196 Female, age 79, unknown 59.2
2198 Male, age 80, both hemispheres 58.3
2645 Female, age 72, unknown 58.3
2284 Female, age 91, both hemispheres 57.6
2491 Male, age 75, both hemispheres 57.4
2392 Female, age 94, both hemispheres 57.2
Globus pallidus, externus
nTPM: 62.6
2567 Female, age 72, unknown 70.8
2646 Male, age 61, right hemisphere 69.3
2395 Male, age 75, both hemispheres 60.9
1996 Male, age 80, right hemisphere 57.4
2772 Female, age 79, unknown 54.5
Globus pallidus, internus
nTPM: 60.8
2566 Female, age 72, unknown 67.7
2111 Female, age 85, right hemisphere 66.1
1818 Male, age 74, unknown 60.5
2287 Male, age 75, right hemisphere 59.5
2037 Male, age 80, right hemisphere 58.3
2778 Female, age 91, both hemispheres 58.2
2483 Female, age 94, right hemisphere 55.4
Nucleus accumbens
nTPM: 54.1
2698 Female, age 72, unknown 57.3
2391 Female, age 94, left hemisphere 56.6
2732 Male, age 80, right hemisphere 54.9
1806 Female, age 85, left hemisphere 54.2
1783 Male, age 74, unknown 53.5
2286 Male, age 75, left hemisphere 53.0
2824 Male, age 61, right hemisphere 51.6
1856 Female, age 91, right hemisphere 51.5
Nucleus basalis of Meynert
nTPM: 58.2
2569 Male, age 61, both hemispheres 66.8
2821 Male, age 75, both hemispheres 57.5
2393 Male, age 80, right hemisphere 55.2
2484 Female, age 94, left hemisphere 53.1
Nucleus of the diagonal band
nTPM: 54.0
1979 Male, age 74, unknown 55.7
2195 Female, age 85, both hemispheres 55.1
2029 Male, age 61, right hemisphere 54.5
1812 Female, age 91, both hemispheres 52.6
2775 Male, age 80, right hemisphere 52.1
Olfactory tubercle
nTPM: 54.2
2856 Male, age 75, right hemisphere 55.9
2487 Female, age 94, left hemisphere 55.4
1846 Male, age 80, right hemisphere 53.5
1998 Female, age 91, both hemispheres 52.1
Putamen
nTPM: 55.4
2647 Male, age 75, left hemisphere 59.9
2489 Female, age 72, unknown 58.1
1829 Male, age 74, unknown 57.0
2482 Female, age 94, left hemisphere 53.8
1838 Male, age 80, right hemisphere 52.9
1937 Female, age 91, right hemisphere 52.9
2466 Female, age 79, unknown 52.8
Septal nuclei
nTPM: 55.1
2199 Male, age 80, right hemisphere 58.1
2394 Male, age 61, left hemisphere 57.8
2629 Female, age 94, right hemisphere 56.4
2059 Female, age 85, both hemispheres 56.2
1960 Male, age 74, unknown 53.1
2009 Female, age 91, both hemispheres 52.2
2031 Female, age 72, unknown 51.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.1
Samples: 246

Max nTPM: 97.6
Min nTPM: 19.2
Std nTPM: 14.1
Median nTPM: 38.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 97.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 94.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 83.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 82.3
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 79.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 77.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 74.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 74.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 74.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 73.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 72.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 114.9
Min nTPM: 15.5
Std nTPM: 16.6
Median nTPM: 34.8
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 114.9
GTEX-1I1HK-0011-R6b-SM-CM2T9 60-69 years, male 104.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 101.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 101.0
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 81.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 80.2
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 77.2
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 76.3
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 73.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 72.7
GTEX-1EWIQ-0011-R6a-SM-ARU8G 70-79 years, female 72.6
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Brain - Putamen (basal ganglia)
Average nTPM: 47.6
Samples: 205

Max nTPM: 113.7
Min nTPM: 17.5
Std nTPM: 14.3
Median nTPM: 45.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 113.7
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 85.4
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 83.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 80.9
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 80.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 80.5
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 80.1
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 80.0
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 79.8
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 77.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 76.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 19.1
FF:10164-103B2 76 years, female 19.1
Globus pallidus
Scaled Tags Per Million: 37.9
FF:10161-103A8 76 years, female 42.8
FF:10175-103C4 60 years, female 33.1
Nucleus accumbens
Scaled Tags Per Million: 17.1
FF:10037-101F1 23-56 years, mixed 17.1
Putamen
Scaled Tags Per Million: 19.6
FF:10176-103C5 60 years, female 19.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 10.9
Pig sample Sample description nTPM
Caudate
nTPM: 8.4
Samples: 4

Max nTPM: 8.7
Min nTPM: 8.0
Sample A Female 8.7
Sample B Female 8.0
Sample C Male 8.2
Sample D Male 8.6
Putamen
nTPM: 8.4
Samples: 4

Max nTPM: 10.1
Min nTPM: 7.0
Sample A Female 10.1
Sample B Female 7.0
Sample C Male 7.9
Sample D Male 8.5
Septum
nTPM: 10.9
Samples: 4

Max nTPM: 12.0
Min nTPM: 10.1
Sample A Female 10.1
Sample B Female 10.2
Sample C Male 12.0
Sample D Male 11.1
Ventral pallidum
nTPM: 9.4
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.6
Sample A Female 7.6
Sample B Female 9.1
Sample C Male 11.3
Sample D Male 9.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 13.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 12.7
Samples: 4

Max nTPM: 14.9
Min nTPM: 10.5
Sample A Male 12.6
Sample B Male 10.5
Sample C Female 14.9
Sample D Female 12.7
Septum
nTPM: 13.1
Samples: 4

Max nTPM: 13.7
Min nTPM: 12.3
Sample A Male 13.5
Sample B Male 12.3
Sample C Female 12.8
Sample D Female 13.7
Ventral forebrain
nTPM: 11.6
Samples: 4

Max nTPM: 13.7
Min nTPM: 9.7
Sample A Male 12.0
Sample B Male 9.7
Sample C Female 10.8
Sample D Female 13.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
70474779 Antisense, RP_050623_01_A02, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
70474779 Antisense, RP_050623_01_A02, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.