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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:51.1 nTPM
HPA:51.1 nTPM
GTEx:48.2 nTPM
FANTOM5:64.6 Scaled Tags Per Million
Pig:43.6 nTPM
Mouse:64.6 nTPM
Allen mouse:0.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.0
2586 Male, age 75, left hemisphere 55.1
2219 Male, age 76, both hemispheres 46.0
2666 Male, age 74, left hemisphere 38.7
2828 Female, age 72, unknown 36.9
1833 Male, age 53, unknown 31.1
2019 Male, age 18, unknown 30.7
1830 Male, age 51, unknown 26.8
1870 Female, age 42, unknown 26.5
1827 Male, age 72, unknown 24.8
2411 Female, age 72, unknown 23.4
Dorsal raphe nucleus
nTPM: 34.2
2047 Male, age 72, unknown 40.7
2016 Female, age 72, unknown 35.8
1828 Male, age 53, unknown 34.0
2750 Male, age 76, both hemispheres 31.7
2298 Female, age 72, unknown 28.9
Inferior colliculus
nTPM: 35.9
2849 Male, age 72, unknown 46.8
1848 Female, age 42, unknown 36.9
1890 Male, age 53, unknown 34.0
2097 Female, age 72, unknown 26.2
Median raphe nucleus
nTPM: 51.1
2220 Male, age 76, midline 51.1
Pedunculopontine tegmental nucleus
nTPM: 26.7
1921 Female, age 85, both hemispheres 34.6
2334 Male, age 80, both hemispheres 31.6
2338 Male, age 61, both hemispheres 14.0
Periaquaductal grey, anterior
nTPM: 35.5
2502 Female, age 75, unknown 44.8
1795 Male, age 51, unknown 33.6
1947 Male, age 18, unknown 27.9
Periaquaductal grey, dorsal
nTPM: 37.8
2850 Male, age 76, both hemispheres 50.8
1840 Male, age 53, unknown 45.9
2464 Female, age 72, unknown 27.5
1831 Male, age 72, unknown 27.1
Periaquaductal grey, lateral
nTPM: 35.4
2140 Male, age 76, both hemispheres 41.9
2053 Male, age 18, unknown 38.5
2272 Male, age 74, both hemispheres 25.8
Pretectal area
nTPM: 36.5
2667 Female, age 75, unknown 49.5
1944 Female, age 72, unknown 43.4
1816 Male, age 51, unknown 40.7
1817 Female, age 42, unknown 39.6
1815 Male, age 53, unknown 37.8
2825 Male, age 18, unknown 37.4
2007 Male, age 72, unknown 34.5
2407 Male, age 75, both hemispheres 33.4
2224 Female, age 72, unknown 31.9
2316 Male, age 76, right hemisphere 27.0
2273 Male, age 74, both hemispheres 26.8
Red nucleus
nTPM: 39.4
1821 Female, age 72, unknown 48.2
1904 Male, age 53, unknown 47.7
2769 Male, age 72, unknown 46.3
2227 Male, age 72, unknown 45.1
1954 Female, age 42, unknown 41.7
2588 Male, age 74, left hemisphere 40.8
2823 Male, age 76, right hemisphere 40.4
2503 Female, age 72, unknown 39.6
1865 Male, age 51, unknown 38.6
2785 Male, age 18, unknown 30.1
2725 Female, age 75, unknown 29.7
2584 Male, age 75, left hemisphere 25.1
Substantia nigra
nTPM: 47.6
2699 Male, age 18, unknown 72.4
1916 Female, age 42, unknown 58.9
2665 Male, age 74, both hemispheres 58.5
1851 Male, age 51, unknown 55.8
2241 Male, age 72, unknown 48.8
1889 Female, age 72, unknown 43.1
2583 Male, age 75, right hemisphere 40.2
1941 Male, age 53, unknown 35.9
2590 Female, age 75, unknown 31.9
2409 Female, age 72, unknown 30.9
Superior colliculus
nTPM: 35.2
2664 Male, age 75, both hemispheres 58.0
2587 Male, age 74, left hemisphere 39.5
2087 Female, age 72, unknown 37.4
1839 Male, age 51, unknown 37.2
2668 Female, age 75, unknown 36.8
1796 Male, age 53, unknown 31.5
2261 Male, age 18, unknown 31.1
1895 Male, age 76, right hemisphere 29.1
1995 Male, age 72, unknown 26.4
1913 Female, age 42, unknown 25.3
Ventral tegmental area
nTPM: 42.4
2218 Male, age 76, both hemispheres 48.4
1915 Female, age 42, unknown 47.0
2021 Male, age 53, unknown 41.5
2410 Female, age 72, unknown 41.2
2223 Female, age 72, unknown 39.8
1942 Male, age 51, unknown 36.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 80.9
Min nTPM: 20.3
Std nTPM: 11.3
Median nTPM: 47.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 80.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 74.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 73.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 73.8
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 72.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 70.8
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 69.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 69.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 67.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 64.8
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 64.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.6
FF:10158-103A5 76 years, female 64.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.6
Pig sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 53.2
Min nTPM: 29.8
Sample A Female 29.8
Sample B Female 42.5
Sample C Male 53.2
Sample D Male 49.0
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 40.0
Min nTPM: 29.8
Sample B Female 40.0
Sample C Male 36.1
Sample D Male 29.8
Substantia nigra
nTPM: 38.7
Samples: 4

Max nTPM: 44.9
Min nTPM: 32.4
Sample A Female 43.1
Sample B Female 34.4
Sample C Male 44.9
Sample D Male 32.4
Superior colliculi
nTPM: 39.7
Samples: 4

Max nTPM: 46.2
Min nTPM: 26.0
Sample A Female 40.4
Sample B Female 26.0
Sample C Male 46.1
Sample D Male 46.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 64.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 64.7
Samples: 4

Max nTPM: 68.2
Min nTPM: 61.3
Sample A Male 68.2
Sample B Male 61.3
Sample C Female 63.4
Sample D Female 65.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74058647 Antisense, RP_051019_03_F09, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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