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CHI3L1
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:47.4 nTPM
HPA:47.4 nTPM
GTEx:50.7 nTPM
FANTOM5:104.7 Scaled Tags Per Million
Pig:0.4 nTPM
Mouse:11.9 nTPM
Allen mouse:0.2 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Hippocampus
nTPM: 42.5
2621 Female, age 67, right hemisphere 47.3
2529 Female, age 94, left hemisphere 43.7
1898 Male, age 80, left hemisphere 43.3
1855 Male, age 76, left hemisphere 41.5
2148 Female, age 91, left hemisphere 39.6
1911 Female, age 85, right hemisphere 39.5
Dentate gyrus
nTPM: 44.8
2530 Female, age 94, left hemisphere 51.2
2246 Female, age 85, both hemispheres 48.8
2528 Male, age 74, both hemispheres 45.9
2010 Male, age 76, both hemispheres 44.6
2531 Female, age 67, both hemispheres 39.9
1927 Female, age 91, both hemispheres 38.5
Entorhinal gyrus
nTPM: 47.4
2686 Male, age 75, right hemisphere 57.8
2117 Female, age 91, right hemisphere 49.9
2764 Male, age 80, right hemisphere 45.8
1938 Female, age 85, left hemisphere 44.0
1787 Male, age 76, left hemisphere 43.7
2613 Female, age 94, left hemisphere 43.6
Hippocampus, CA1
nTPM: 44.4
2527 Male, age 74, both hemispheres 56.7
2045 Male, age 76, both hemispheres 42.7
2082 Female, age 91, right hemisphere 41.9
2749 Male, age 80, left hemisphere 41.1
1873 Female, age 85, both hemispheres 39.4
Hippocampus, CA2
nTPM: 45.6
2249 Male, age 74, both hemispheres 56.3
1940 Female, age 85, left hemisphere 50.8
2437 Female, age 94, left hemisphere 43.3
1963 Male, age 80, left hemisphere 42.0
2113 Female, age 91, right hemisphere 41.5
1892 Male, age 76, both hemispheres 39.7
Hippocampus, CA3
nTPM: 47.3
2436 Male, age 74, both hemispheres 71.4
2137 Male, age 80, left hemisphere 46.2
1867 Male, age 76, both hemispheres 43.3
2620 Female, age 94, left hemisphere 42.2
1891 Female, age 85, both hemispheres 41.5
2861 Female, age 67, both hemispheres 39.6
Parahippocampal cortex
nTPM: 46.5
2250 Female, age 67, right hemisphere 53.3
1850 Male, age 80, both hemispheres 49.5
2018 Male, age 76, both hemispheres 49.4
2692 Male, age 74, both hemispheres 49.4
2622 Female, age 67, right hemisphere 49.0
2532 Female, age 72, left hemisphere 48.4
2693 Female, age 94, both hemispheres 43.4
1933 Female, age 85, both hemispheres 42.6
2245 Female, age 91, both hemispheres 40.7
1990 Female, age 91, right hemisphere 39.8
Perirhinal gyrus
nTPM: 44.1
1794 Male, age 80, right hemisphere 53.6
2848 Male, age 76, right hemisphere 42.7
2521 Female, age 94, right hemisphere 42.4
1841 Female, age 85, right hemisphere 42.0
1847 Female, age 91, left hemisphere 39.8
Subiculum
nTPM: 43.7
2619 Male, age 74, both hemispheres 48.4
2042 Male, age 76, both hemispheres 43.8
2438 Female, age 94, left hemisphere 43.7
1901 Male, age 80, both hemispheres 43.1
2729 Female, age 91, right hemisphere 42.2
1977 Female, age 85, both hemispheres 41.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 50.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 50.7
Samples: 197

Max nTPM: 803.4
Min nTPM: 2.2
Std nTPM: 116.6
Median nTPM: 18.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 803.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 774.8
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 715.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 631.5
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 546.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 422.6
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 377.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 283.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 177.5
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 172.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 146.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 104.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 104.7
FF:10169-103B7 60 years, female 120.3
FF:10153-102I9 76 years, female 89.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 0.4
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 0.3
Samples: 4

Max nTPM: 0.4
Min nTPM: 0.1
Sample A Female 0.4
Sample B Female 0.2
Sample C Male 0.1
Sample D Male 0.4
Entorhinal cortex
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Female 0.3
Sample B Female 0.7
Sample C Male 0.3
Sample D Male 0.5
Subiculum
nTPM: 0.1
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Female 0.3
Sample B Female 0.0
Sample C Male 0.1
Sample D Male 0.1
Ventral hippocampus
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.1
Sample A Female 0.2
Sample B Female 0.1
Sample C Male 0.3
Sample D Male 0.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 11.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 11.9
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.1
Sample A Male 12.7
Sample B Male 10.1
Sample C Female 13.4
Sample D Female 11.4
Hippocampal formation
nTPM: 11.5
Samples: 4

Max nTPM: 13.4
Min nTPM: 10.4
Sample A Male 13.4
Sample B Male 10.4
Sample C Female 11.0
Sample D Female 11.1

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.2
68443232 Antisense, RP_050111_01_F02, Mouse strain C57BL/6J (56 days, male) 0.2

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