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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:258.8 nTPM
HPA:258.8 nTPM
GTEx:188.7 nTPM
FANTOM5:462.7 Scaled Tags Per Million
Pig:90.6 nTPM
Mouse:236.4 nTPM
Allen mouse:12.9 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 258.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 196.7
1827 Male, age 72, unknown 221.0
1870 Female, age 42, unknown 218.3
2411 Female, age 72, unknown 215.3
2666 Male, age 74, left hemisphere 200.4
1833 Male, age 53, unknown 196.9
2828 Female, age 72, unknown 196.4
1830 Male, age 51, unknown 188.8
2219 Male, age 76, both hemispheres 181.2
2586 Male, age 75, left hemisphere 178.4
2019 Male, age 18, unknown 169.8
Dorsal raphe nucleus
nTPM: 234.3
2298 Female, age 72, unknown 288.5
2047 Male, age 72, unknown 254.9
2750 Male, age 76, both hemispheres 216.5
1828 Male, age 53, unknown 211.4
2016 Female, age 72, unknown 200.3
Inferior colliculus
nTPM: 197.8
2097 Female, age 72, unknown 210.3
2849 Male, age 72, unknown 207.4
1848 Female, age 42, unknown 196.8
1890 Male, age 53, unknown 176.7
Median raphe nucleus
nTPM: 258.8
2220 Male, age 76, midline 258.8
Pedunculopontine tegmental nucleus
nTPM: 204.8
2334 Male, age 80, both hemispheres 216.2
1921 Female, age 85, both hemispheres 215.9
2338 Male, age 61, both hemispheres 182.3
Periaquaductal grey, anterior
nTPM: 220.0
1947 Male, age 18, unknown 250.6
1795 Male, age 51, unknown 215.7
2502 Female, age 75, unknown 193.8
Periaquaductal grey, dorsal
nTPM: 214.1
2850 Male, age 76, both hemispheres 250.4
1840 Male, age 53, unknown 229.6
2464 Female, age 72, unknown 194.7
1831 Male, age 72, unknown 181.8
Periaquaductal grey, lateral
nTPM: 213.7
2272 Male, age 74, both hemispheres 227.0
2053 Male, age 18, unknown 208.6
2140 Male, age 76, both hemispheres 205.3
Pretectal area
nTPM: 211.7
2224 Female, age 72, unknown 242.1
2825 Male, age 18, unknown 227.7
2273 Male, age 74, both hemispheres 226.8
2667 Female, age 75, unknown 220.0
1816 Male, age 51, unknown 217.9
1815 Male, age 53, unknown 213.2
1817 Female, age 42, unknown 211.1
1944 Female, age 72, unknown 211.1
2007 Male, age 72, unknown 206.0
2407 Male, age 75, both hemispheres 190.3
2316 Male, age 76, right hemisphere 162.7
Red nucleus
nTPM: 175.2
2725 Female, age 75, unknown 205.7
1821 Female, age 72, unknown 196.2
2584 Male, age 75, left hemisphere 180.0
1954 Female, age 42, unknown 177.2
1865 Male, age 51, unknown 174.8
2503 Female, age 72, unknown 174.6
1904 Male, age 53, unknown 171.9
2227 Male, age 72, unknown 168.8
2769 Male, age 72, unknown 167.7
2823 Male, age 76, right hemisphere 165.7
2588 Male, age 74, left hemisphere 160.2
2785 Male, age 18, unknown 158.9
Substantia nigra
nTPM: 211.7
1916 Female, age 42, unknown 235.0
2241 Male, age 72, unknown 233.5
1851 Male, age 51, unknown 223.3
1889 Female, age 72, unknown 216.2
1941 Male, age 53, unknown 216.1
2409 Female, age 72, unknown 213.8
2699 Male, age 18, unknown 206.9
2590 Female, age 75, unknown 195.3
2665 Male, age 74, both hemispheres 191.0
2583 Male, age 75, right hemisphere 186.2
Superior colliculus
nTPM: 190.7
2587 Male, age 74, left hemisphere 214.0
1796 Male, age 53, unknown 206.9
2261 Male, age 18, unknown 205.9
1839 Male, age 51, unknown 196.8
2087 Female, age 72, unknown 193.8
2668 Female, age 75, unknown 186.7
1895 Male, age 76, right hemisphere 181.2
1913 Female, age 42, unknown 180.2
1995 Male, age 72, unknown 171.3
2664 Male, age 75, both hemispheres 170.1
Ventral tegmental area
nTPM: 213.8
2410 Female, age 72, unknown 225.6
1915 Female, age 42, unknown 221.5
2218 Male, age 76, both hemispheres 216.2
2021 Male, age 53, unknown 215.5
2223 Female, age 72, unknown 206.7
1942 Male, age 51, unknown 197.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 188.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 188.7
Samples: 139

Max nTPM: 304.7
Min nTPM: 111.4
Std nTPM: 42.8
Median nTPM: 186.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 304.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 302.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 302.4
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 301.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 284.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 281.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 277.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 271.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 262.9
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 261.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 260.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 462.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 462.7
FF:10158-103A5 76 years, female 462.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 90.6
Pig sample Sample description nTPM
Midbrain
nTPM: 90.6
Samples: 4

Max nTPM: 112.7
Min nTPM: 78.1
Sample A Female 112.7
Sample B Female 84.1
Sample C Male 87.6
Sample D Male 78.1
Periaqueductal gray
nTPM: 85.5
Samples: 3

Max nTPM: 100.4
Min nTPM: 75.0
Sample B Female 81.1
Sample C Male 100.4
Sample D Male 75.0
Substantia nigra
nTPM: 89.1
Samples: 4

Max nTPM: 103.4
Min nTPM: 71.8
Sample A Female 103.4
Sample B Female 78.7
Sample C Male 102.4
Sample D Male 71.8
Superior colliculi
nTPM: 83.3
Samples: 4

Max nTPM: 91.0
Min nTPM: 70.1
Sample A Female 91.0
Sample B Female 85.6
Sample C Male 86.3
Sample D Male 70.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 236.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 236.4
Samples: 4

Max nTPM: 251.1
Min nTPM: 225.7
Sample A Male 242.3
Sample B Male 226.3
Sample C Female 225.7
Sample D Female 251.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.9
686217 Antisense, RP_040916_01_C03, Mouse strain C57BL/6J (56 days, male) 13.2
70743884 Antisense, RP_050725_01_H08, Mouse strain C57BL/6J (56 days, male) 12.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.