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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:16.0 nTPM
HPA:16.0 nTPM
GTEx:29.1 nTPM
FANTOM5:125.4 Scaled Tags Per Million
Pig:29.9 nTPM
Mouse:24.6 nTPM
Allen mouse:3.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA016865Antibody HPA024801
Glial cells LowLow
Neuronal cells HighLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.0
Sample id Sample description nTPM
Hippocampus
nTPM: 12.3
2148 Female, age 91, left hemisphere 15.7
2621 Female, age 67, right hemisphere 15.2
1898 Male, age 80, left hemisphere 13.2
1855 Male, age 76, left hemisphere 10.9
2529 Female, age 94, left hemisphere 10.8
1911 Female, age 85, right hemisphere 7.9
Dentate gyrus
nTPM: 12.7
2531 Female, age 67, both hemispheres 16.3
2530 Female, age 94, left hemisphere 14.9
1927 Female, age 91, both hemispheres 13.7
2528 Male, age 74, both hemispheres 11.4
2010 Male, age 76, both hemispheres 10.3
2246 Female, age 85, both hemispheres 9.2
Entorhinal gyrus
nTPM: 16.0
2613 Female, age 94, left hemisphere 23.3
2764 Male, age 80, right hemisphere 18.5
2686 Male, age 75, right hemisphere 15.2
1938 Female, age 85, left hemisphere 14.6
1787 Male, age 76, left hemisphere 14.0
2117 Female, age 91, right hemisphere 10.4
Hippocampus, CA1
nTPM: 12.2
2749 Male, age 80, left hemisphere 16.6
2527 Male, age 74, both hemispheres 11.5
2045 Male, age 76, both hemispheres 11.3
2082 Female, age 91, right hemisphere 10.9
1873 Female, age 85, both hemispheres 10.8
Hippocampus, CA2
nTPM: 10.1
1963 Male, age 80, left hemisphere 14.7
2437 Female, age 94, left hemisphere 13.7
1892 Male, age 76, both hemispheres 12.2
2113 Female, age 91, right hemisphere 9.2
2249 Male, age 74, both hemispheres 7.1
1940 Female, age 85, left hemisphere 3.7
Hippocampus, CA3
nTPM: 13.8
2620 Female, age 94, left hemisphere 23.4
2861 Female, age 67, both hemispheres 21.4
2137 Male, age 80, left hemisphere 12.7
1867 Male, age 76, both hemispheres 9.0
1891 Female, age 85, both hemispheres 8.7
2436 Male, age 74, both hemispheres 7.7
Parahippocampal cortex
nTPM: 12.6
2622 Female, age 67, right hemisphere 16.2
2692 Male, age 74, both hemispheres 15.2
1990 Female, age 91, right hemisphere 14.6
2693 Female, age 94, both hemispheres 12.6
1850 Male, age 80, both hemispheres 12.3
2245 Female, age 91, both hemispheres 12.2
1933 Female, age 85, both hemispheres 12.1
2250 Female, age 67, right hemisphere 11.1
2532 Female, age 72, left hemisphere 11.0
2018 Male, age 76, both hemispheres 8.8
Perirhinal gyrus
nTPM: 13.0
1847 Female, age 91, left hemisphere 16.0
1794 Male, age 80, right hemisphere 13.0
2521 Female, age 94, right hemisphere 12.8
1841 Female, age 85, right hemisphere 11.6
2848 Male, age 76, right hemisphere 11.5
Subiculum
nTPM: 10.6
2619 Male, age 74, both hemispheres 13.7
1977 Female, age 85, both hemispheres 12.9
2438 Female, age 94, left hemisphere 9.9
2729 Female, age 91, right hemisphere 9.9
1901 Male, age 80, both hemispheres 9.8
2042 Male, age 76, both hemispheres 7.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 29.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.1
Samples: 197

Max nTPM: 49.2
Min nTPM: 10.6
Std nTPM: 8.2
Median nTPM: 28.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 49.2
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 48.9
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 47.6
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 47.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 47.3
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 47.0
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 46.4
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 44.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 44.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 44.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 43.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 125.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 125.4
FF:10169-103B7 60 years, female 128.7
FF:10153-102I9 76 years, female 122.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 27.9
Samples: 4

Max nTPM: 33.4
Min nTPM: 22.2
Sample A Female 33.4
Sample B Female 32.7
Sample C Male 23.2
Sample D Male 22.2
Entorhinal cortex
nTPM: 29.9
Samples: 4

Max nTPM: 31.6
Min nTPM: 28.1
Sample A Female 31.6
Sample B Female 30.1
Sample C Male 29.7
Sample D Male 28.1
Subiculum
nTPM: 24.2
Samples: 4

Max nTPM: 31.2
Min nTPM: 20.0
Sample A Female 31.2
Sample B Female 22.1
Sample C Male 23.3
Sample D Male 20.0
Ventral hippocampus
nTPM: 27.2
Samples: 4

Max nTPM: 34.4
Min nTPM: 20.8
Sample A Female 23.6
Sample B Female 20.8
Sample C Male 34.4
Sample D Male 29.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 24.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.6
Samples: 4

Max nTPM: 22.2
Min nTPM: 19.0
Sample A Male 20.5
Sample B Male 19.0
Sample C Female 20.7
Sample D Female 22.2
Hippocampal formation
nTPM: 24.6
Samples: 4

Max nTPM: 29.7
Min nTPM: 19.1
Sample A Male 19.1
Sample B Male 26.4
Sample C Female 29.7
Sample D Female 23.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.2
68920413 Antisense, RP_050301_02_H09, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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