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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:33.3 nTPM
HPA:33.3 nTPM
GTEx:18.9 nTPM
FANTOM5:52.3 Scaled Tags Per Million
Pig:5.0 nTPM
Mouse:18.6 nTPM
Allen mouse:0.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA022011
Glial cells Not detected
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 33.3
Sample id Sample description nTPM
Hippocampus
nTPM: 33.3
2148 Female, age 91, left hemisphere 35.9
1911 Female, age 85, right hemisphere 35.6
2529 Female, age 94, left hemisphere 34.8
1855 Male, age 76, left hemisphere 33.5
1898 Male, age 80, left hemisphere 32.4
2621 Female, age 67, right hemisphere 27.6
Dentate gyrus
nTPM: 27.9
2528 Male, age 74, both hemispheres 34.9
2246 Female, age 85, both hemispheres 28.9
2010 Male, age 76, both hemispheres 27.2
1927 Female, age 91, both hemispheres 26.2
2530 Female, age 94, left hemisphere 25.4
2531 Female, age 67, both hemispheres 24.4
Entorhinal gyrus
nTPM: 26.7
2117 Female, age 91, right hemisphere 34.6
2686 Male, age 75, right hemisphere 28.2
1938 Female, age 85, left hemisphere 28.0
1787 Male, age 76, left hemisphere 25.7
2764 Male, age 80, right hemisphere 22.8
2613 Female, age 94, left hemisphere 20.7
Hippocampus, CA1
nTPM: 30.2
1873 Female, age 85, both hemispheres 35.3
2527 Male, age 74, both hemispheres 33.6
2082 Female, age 91, right hemisphere 33.2
2045 Male, age 76, both hemispheres 26.2
2749 Male, age 80, left hemisphere 22.5
Hippocampus, CA2
nTPM: 28.4
2113 Female, age 91, right hemisphere 36.2
2249 Male, age 74, both hemispheres 32.8
1940 Female, age 85, left hemisphere 27.6
1963 Male, age 80, left hemisphere 25.4
2437 Female, age 94, left hemisphere 24.8
1892 Male, age 76, both hemispheres 23.5
Hippocampus, CA3
nTPM: 27.9
1891 Female, age 85, both hemispheres 33.5
2861 Female, age 67, both hemispheres 29.3
2620 Female, age 94, left hemisphere 28.7
2436 Male, age 74, both hemispheres 27.4
1867 Male, age 76, both hemispheres 25.2
2137 Male, age 80, left hemisphere 23.6
Parahippocampal cortex
nTPM: 28.2
2692 Male, age 74, both hemispheres 32.2
2245 Female, age 91, both hemispheres 30.6
2622 Female, age 67, right hemisphere 30.3
2250 Female, age 67, right hemisphere 30.0
1933 Female, age 85, both hemispheres 28.7
1990 Female, age 91, right hemisphere 28.6
2018 Male, age 76, both hemispheres 26.6
1850 Male, age 80, both hemispheres 25.9
2693 Female, age 94, both hemispheres 25.0
2532 Female, age 72, left hemisphere 24.3
Perirhinal gyrus
nTPM: 25.9
1847 Female, age 91, left hemisphere 29.3
1841 Female, age 85, right hemisphere 27.3
1794 Male, age 80, right hemisphere 25.5
2521 Female, age 94, right hemisphere 23.9
2848 Male, age 76, right hemisphere 23.4
Subiculum
nTPM: 30.5
2729 Female, age 91, right hemisphere 41.3
2619 Male, age 74, both hemispheres 32.4
2042 Male, age 76, both hemispheres 28.6
2438 Female, age 94, left hemisphere 28.1
1901 Male, age 80, both hemispheres 26.7
1977 Female, age 85, both hemispheres 26.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 18.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 18.9
Samples: 197

Max nTPM: 51.3
Min nTPM: 0.8
Std nTPM: 9.1
Median nTPM: 17.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 51.3
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 51.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 45.4
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 44.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 42.6
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 41.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 40.8
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 38.9
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 38.5
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 37.3
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 36.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 52.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 52.3
FF:10153-102I9 76 years, female 54.5
FF:10169-103B7 60 years, female 50.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.0
Samples: 4

Max nTPM: 7.5
Min nTPM: 3.2
Sample A Female 5.0
Sample B Female 7.5
Sample C Male 4.4
Sample D Male 3.2
Entorhinal cortex
nTPM: 3.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 1.8
Sample A Female 2.1
Sample B Female 5.3
Sample C Male 3.2
Sample D Male 1.8
Subiculum
nTPM: 3.7
Samples: 4

Max nTPM: 6.4
Min nTPM: 2.2
Sample A Female 2.2
Sample B Female 6.4
Sample C Male 3.1
Sample D Male 3.2
Ventral hippocampus
nTPM: 4.5
Samples: 4

Max nTPM: 6.8
Min nTPM: 3.1
Sample A Female 3.1
Sample B Female 6.8
Sample C Male 3.6
Sample D Male 4.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.3
Sample A Male 18.2
Sample B Male 20.2
Sample C Female 19.8
Sample D Female 16.3
Hippocampal formation
nTPM: 18.4
Samples: 4

Max nTPM: 20.5
Min nTPM: 17.1
Sample A Male 18.8
Sample B Male 17.3
Sample C Female 17.1
Sample D Female 20.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.0
71789849 Antisense, RP_050921_03_G05, Mouse strain C57BL/6J (56 days, male) 0.0

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