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PSRC1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:79.9 nTPM
HPA:79.9 nTPM
GTEx:65.5 nTPM
FANTOM5:88.1 Scaled Tags Per Million
Pig:4.1 nTPM
Mouse:0.3 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 79.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.2
1830 Male, age 51, unknown 81.7
2586 Male, age 75, left hemisphere 79.1
1870 Female, age 42, unknown 76.9
2411 Female, age 72, unknown 76.6
1833 Male, age 53, unknown 75.7
2019 Male, age 18, unknown 73.0
2666 Male, age 74, left hemisphere 70.6
2828 Female, age 72, unknown 67.7
1827 Male, age 72, unknown 64.3
2219 Male, age 76, both hemispheres 56.7
Dorsal raphe nucleus
nTPM: 64.4
2750 Male, age 76, both hemispheres 71.1
2016 Female, age 72, unknown 69.0
1828 Male, age 53, unknown 66.1
2298 Female, age 72, unknown 58.4
2047 Male, age 72, unknown 57.5
Inferior colliculus
nTPM: 61.8
2849 Male, age 72, unknown 64.7
1848 Female, age 42, unknown 63.9
1890 Male, age 53, unknown 61.8
2097 Female, age 72, unknown 56.8
Median raphe nucleus
nTPM: 63.1
2220 Male, age 76, midline 63.1
Pedunculopontine tegmental nucleus
nTPM: 65.7
2334 Male, age 80, both hemispheres 69.3
2338 Male, age 61, both hemispheres 68.5
1921 Female, age 85, both hemispheres 59.1
Periaquaductal grey, anterior
nTPM: 62.7
2502 Female, age 75, unknown 65.7
1947 Male, age 18, unknown 62.3
1795 Male, age 51, unknown 60.2
Periaquaductal grey, dorsal
nTPM: 62.2
2464 Female, age 72, unknown 65.6
2850 Male, age 76, both hemispheres 65.5
1831 Male, age 72, unknown 61.2
1840 Male, age 53, unknown 56.5
Periaquaductal grey, lateral
nTPM: 68.1
2272 Male, age 74, both hemispheres 72.1
2140 Male, age 76, both hemispheres 67.0
2053 Male, age 18, unknown 65.2
Pretectal area
nTPM: 61.9
1815 Male, age 53, unknown 67.9
2316 Male, age 76, right hemisphere 67.9
2407 Male, age 75, both hemispheres 65.5
2273 Male, age 74, both hemispheres 64.8
2825 Male, age 18, unknown 64.7
1817 Female, age 42, unknown 61.9
2007 Male, age 72, unknown 61.4
2224 Female, age 72, unknown 59.2
2667 Female, age 75, unknown 57.4
1944 Female, age 72, unknown 56.9
1816 Male, age 51, unknown 53.6
Red nucleus
nTPM: 79.9
1865 Male, age 51, unknown 89.2
2227 Male, age 72, unknown 86.0
2769 Male, age 72, unknown 85.4
1904 Male, age 53, unknown 83.6
1821 Female, age 72, unknown 80.2
2785 Male, age 18, unknown 80.1
2503 Female, age 72, unknown 79.4
2823 Male, age 76, right hemisphere 79.1
1954 Female, age 42, unknown 78.0
2588 Male, age 74, left hemisphere 76.4
2725 Female, age 75, unknown 73.2
2584 Male, age 75, left hemisphere 68.8
Substantia nigra
nTPM: 67.1
2590 Female, age 75, unknown 74.9
2583 Male, age 75, right hemisphere 74.6
2699 Male, age 18, unknown 73.6
2409 Female, age 72, unknown 69.7
1851 Male, age 51, unknown 69.0
1889 Female, age 72, unknown 64.2
1941 Male, age 53, unknown 62.5
2241 Male, age 72, unknown 61.6
2665 Male, age 74, both hemispheres 61.4
1916 Female, age 42, unknown 59.6
Superior colliculus
nTPM: 67.2
1913 Female, age 42, unknown 84.1
1995 Male, age 72, unknown 78.3
1839 Male, age 51, unknown 68.4
2587 Male, age 74, left hemisphere 67.5
2668 Female, age 75, unknown 65.6
1895 Male, age 76, right hemisphere 64.9
2664 Male, age 75, both hemispheres 63.8
1796 Male, age 53, unknown 63.4
2261 Male, age 18, unknown 58.7
2087 Female, age 72, unknown 57.6
Ventral tegmental area
nTPM: 69.1
2223 Female, age 72, unknown 81.0
2410 Female, age 72, unknown 71.7
1942 Male, age 51, unknown 67.3
2021 Male, age 53, unknown 67.1
1915 Female, age 42, unknown 63.9
2218 Male, age 76, both hemispheres 63.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.5
Samples: 139

Max nTPM: 197.1
Min nTPM: 21.4
Std nTPM: 30.4
Median nTPM: 58.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 197.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 179.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 161.9
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 139.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 136.0
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 123.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 122.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 114.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 113.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 112.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 111.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 88.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 88.1
FF:10158-103A5 76 years, female 88.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 4.1
Pig sample Sample description nTPM
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.6
Sample A Female 3.8
Sample B Female 2.6
Sample C Male 3.7
Sample D Male 2.8
Periaqueductal gray
nTPM: 2.8
Samples: 3

Max nTPM: 2.9
Min nTPM: 2.6
Sample B Female 2.6
Sample C Male 2.9
Sample D Male 2.8
Substantia nigra
nTPM: 3.0
Samples: 4

Max nTPM: 3.8
Min nTPM: 2.3
Sample A Female 2.7
Sample B Female 2.3
Sample C Male 3.2
Sample D Male 3.8
Superior colliculi
nTPM: 4.1
Samples: 4

Max nTPM: 5.3
Min nTPM: 3.4
Sample A Female 3.9
Sample B Female 5.3
Sample C Male 3.4
Sample D Male 3.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.3
Samples: 4

Max nTPM: 0.5
Min nTPM: 0.0
Sample A Male 0.5
Sample B Male 0.0
Sample C Female 0.3
Sample D Female 0.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
68445101 Antisense, RP_050111_02_G07, Mouse strain C57BL/6J (56 days, male) 1.9
71015388 Antisense, RP_050725_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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