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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.2 nTPM
HPA:1.2 nTPM
GTEx:1.9 nTPM
FANTOM5:1.4 Scaled Tags Per Million
Pig:8.2 nTPM
Mouse:2.1 nTPM

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 1.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.7
2481 Female, age 94, left hemisphere 1.1
1857 Female, age 85, left hemisphere 0.8
2289 Male, age 61, right hemisphere 0.7
2290 Female, age 72, unknown 0.7
2288 Male, age 75, left hemisphere 0.6
1781 Male, age 74, unknown 0.5
1854 Male, age 80, left hemisphere 0.5
2846 Female, age 79, unknown 0.4
Claustrum
nTPM: 0.7
2196 Female, age 79, unknown 0.8
1956 Male, age 74, unknown 0.7
2292 Female, age 85, both hemispheres 0.7
2491 Male, age 75, both hemispheres 0.7
2568 Male, age 61, both hemispheres 0.7
2284 Female, age 91, both hemispheres 0.6
2392 Female, age 94, both hemispheres 0.6
2645 Female, age 72, unknown 0.6
2198 Male, age 80, both hemispheres 0.5
Globus pallidus, externus
nTPM: 0.8
2646 Male, age 61, right hemisphere 1.1
2772 Female, age 79, unknown 0.9
1996 Male, age 80, right hemisphere 0.8
2567 Female, age 72, unknown 0.7
2395 Male, age 75, both hemispheres 0.6
Globus pallidus, internus
nTPM: 0.7
2778 Female, age 91, both hemispheres 0.9
2037 Male, age 80, right hemisphere 0.8
2287 Male, age 75, right hemisphere 0.8
2111 Female, age 85, right hemisphere 0.7
2483 Female, age 94, right hemisphere 0.7
2566 Female, age 72, unknown 0.7
1818 Male, age 74, unknown 0.6
Nucleus accumbens
nTPM: 0.8
2732 Male, age 80, right hemisphere 1.1
2698 Female, age 72, unknown 1.0
1806 Female, age 85, left hemisphere 0.9
2391 Female, age 94, left hemisphere 0.8
1783 Male, age 74, unknown 0.7
1856 Female, age 91, right hemisphere 0.7
2286 Male, age 75, left hemisphere 0.7
2824 Male, age 61, right hemisphere 0.7
Nucleus basalis of Meynert
nTPM: 0.6
2569 Male, age 61, both hemispheres 0.9
2821 Male, age 75, both hemispheres 0.6
2393 Male, age 80, right hemisphere 0.5
2484 Female, age 94, left hemisphere 0.5
Nucleus of the diagonal band
nTPM: 1.2
1979 Male, age 74, unknown 2.6
2195 Female, age 85, both hemispheres 0.9
1812 Female, age 91, both hemispheres 0.8
2029 Male, age 61, right hemisphere 0.8
2775 Male, age 80, right hemisphere 0.7
Olfactory tubercle
nTPM: 0.7
2487 Female, age 94, left hemisphere 0.9
2856 Male, age 75, right hemisphere 0.7
1846 Male, age 80, right hemisphere 0.6
1998 Female, age 91, both hemispheres 0.6
Putamen
nTPM: 0.5
1829 Male, age 74, unknown 0.6
1937 Female, age 91, right hemisphere 0.6
2482 Female, age 94, left hemisphere 0.6
1838 Male, age 80, right hemisphere 0.5
2466 Female, age 79, unknown 0.5
2647 Male, age 75, left hemisphere 0.5
2489 Female, age 72, unknown 0.4
Septal nuclei
nTPM: 1.1
2059 Female, age 85, both hemispheres 1.6
2199 Male, age 80, right hemisphere 1.6
2629 Female, age 94, right hemisphere 1.1
1960 Male, age 74, unknown 1.0
2394 Male, age 61, left hemisphere 1.0
2009 Female, age 91, both hemispheres 0.9
2031 Female, age 72, unknown 0.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 1.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.8
Samples: 246

Max nTPM: 3.0
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 0.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 3.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 2.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 2.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 2.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 2.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 2.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 1.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1.8
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 12.8
Min nTPM: 0.1
Std nTPM: 1.5
Median nTPM: 1.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 12.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 11.4
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 8.3
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 7.7
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 7.1
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 6.5
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 6.4
GTEX-1GZ2Q-0011-R6a-SM-9OSWM 40-49 years, male 5.4
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 5.1
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 4.8
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 4.5
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Brain - Putamen (basal ganglia)
Average nTPM: 0.8
Samples: 205

Max nTPM: 2.8
Min nTPM: 0.1
Std nTPM: 0.5
Median nTPM: 0.7
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 2.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 2.8
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 2.7
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 2.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 2.3
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 2.2
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 2.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 2.1
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 2.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 2.1
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 2.0
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 1.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.7
FF:10164-103B2 76 years, female 0.7
Globus pallidus
Scaled Tags Per Million: 0.5
FF:10175-103C4 60 years, female 0.7
FF:10161-103A8 76 years, female 0.3
Nucleus accumbens
Scaled Tags Per Million: 1.0
FF:10037-101F1 23-56 years, mixed 1.0
Putamen
Scaled Tags Per Million: 1.4
FF:10176-103C5 60 years, female 1.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 8.2
Pig sample Sample description nTPM
Caudate
nTPM: 6.6
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.0
Sample A Female 6.5
Sample B Female 6.6
Sample C Male 7.1
Sample D Male 6.0
Putamen
nTPM: 5.3
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.7
Sample A Female 6.5
Sample B Female 4.7
Sample C Male 5.1
Sample D Male 5.0
Septum
nTPM: 8.2
Samples: 4

Max nTPM: 11.4
Min nTPM: 6.6
Sample A Female 7.0
Sample B Female 6.6
Sample C Male 7.7
Sample D Male 11.4
Ventral pallidum
nTPM: 5.6
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.1
Sample A Female 5.1
Sample B Female 5.3
Sample C Male 5.6
Sample D Male 6.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.6
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 0.7
Sample C Female 0.6
Sample D Female 0.6
Septum
nTPM: 2.1
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.9
Sample A Male 1.9
Sample B Male 2.6
Sample C Female 1.9
Sample D Female 2.0
Ventral forebrain
nTPM: 0.7
Samples: 4

Max nTPM: 1.1
Min nTPM: 0.4
Sample A Male 0.4
Sample B Male 1.1
Sample C Female 0.6
Sample D Female 0.7

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