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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.4 nTPM
HPA:38.4 nTPM
GTEx:25.7 nTPM
FANTOM5:123.4 Scaled Tags Per Million
Pig:38.8 nTPM
Mouse:71.7 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 38.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.3
2666 Male, age 74, left hemisphere 49.2
2019 Male, age 18, unknown 41.0
1827 Male, age 72, unknown 36.8
2411 Female, age 72, unknown 35.9
2828 Female, age 72, unknown 33.6
1870 Female, age 42, unknown 32.1
1833 Male, age 53, unknown 31.7
2219 Male, age 76, both hemispheres 31.4
2586 Male, age 75, left hemisphere 30.8
1830 Male, age 51, unknown 30.4
Dorsal raphe nucleus
nTPM: 33.3
2298 Female, age 72, unknown 36.6
1828 Male, age 53, unknown 35.6
2047 Male, age 72, unknown 32.8
2750 Male, age 76, both hemispheres 32.7
2016 Female, age 72, unknown 28.9
Inferior colliculus
nTPM: 36.6
2097 Female, age 72, unknown 41.4
1890 Male, age 53, unknown 37.5
1848 Female, age 42, unknown 34.7
2849 Male, age 72, unknown 32.7
Median raphe nucleus
nTPM: 34.5
2220 Male, age 76, midline 34.5
Pedunculopontine tegmental nucleus
nTPM: 33.0
2334 Male, age 80, both hemispheres 36.8
1921 Female, age 85, both hemispheres 35.7
2338 Male, age 61, both hemispheres 26.5
Periaquaductal grey, anterior
nTPM: 33.2
1795 Male, age 51, unknown 33.4
1947 Male, age 18, unknown 33.1
2502 Female, age 75, unknown 32.9
Periaquaductal grey, dorsal
nTPM: 31.9
2850 Male, age 76, both hemispheres 32.8
1840 Male, age 53, unknown 32.6
1831 Male, age 72, unknown 31.3
2464 Female, age 72, unknown 30.8
Periaquaductal grey, lateral
nTPM: 30.9
2140 Male, age 76, both hemispheres 31.5
2272 Male, age 74, both hemispheres 30.8
2053 Male, age 18, unknown 30.3
Pretectal area
nTPM: 38.4
1817 Female, age 42, unknown 48.3
1944 Female, age 72, unknown 47.4
1816 Male, age 51, unknown 46.7
2007 Male, age 72, unknown 46.7
1815 Male, age 53, unknown 42.1
2667 Female, age 75, unknown 35.3
2224 Female, age 72, unknown 34.0
2273 Male, age 74, both hemispheres 31.0
2316 Male, age 76, right hemisphere 31.0
2825 Male, age 18, unknown 30.5
2407 Male, age 75, both hemispheres 29.4
Red nucleus
nTPM: 33.0
2785 Male, age 18, unknown 38.3
1821 Female, age 72, unknown 37.5
2725 Female, age 75, unknown 36.4
1954 Female, age 42, unknown 33.2
2584 Male, age 75, left hemisphere 32.5
1865 Male, age 51, unknown 31.5
2503 Female, age 72, unknown 31.5
1904 Male, age 53, unknown 31.4
2769 Male, age 72, unknown 31.4
2823 Male, age 76, right hemisphere 31.2
2227 Male, age 72, unknown 30.9
2588 Male, age 74, left hemisphere 30.1
Substantia nigra
nTPM: 38.1
1916 Female, age 42, unknown 49.1
1889 Female, age 72, unknown 45.0
1851 Male, age 51, unknown 41.2
2241 Male, age 72, unknown 40.3
2409 Female, age 72, unknown 38.7
1941 Male, age 53, unknown 37.6
2583 Male, age 75, right hemisphere 35.9
2699 Male, age 18, unknown 33.1
2665 Male, age 74, both hemispheres 30.8
2590 Female, age 75, unknown 29.1
Superior colliculus
nTPM: 34.7
2668 Female, age 75, unknown 43.0
2087 Female, age 72, unknown 41.2
1796 Male, age 53, unknown 36.8
2261 Male, age 18, unknown 35.3
1895 Male, age 76, right hemisphere 35.2
2587 Male, age 74, left hemisphere 34.1
1839 Male, age 51, unknown 32.9
1913 Female, age 42, unknown 31.4
1995 Male, age 72, unknown 31.4
2664 Male, age 75, both hemispheres 25.6
Ventral tegmental area
nTPM: 35.9
2410 Female, age 72, unknown 45.2
1915 Female, age 42, unknown 39.4
2218 Male, age 76, both hemispheres 37.1
1942 Male, age 51, unknown 32.5
2223 Female, age 72, unknown 31.5
2021 Male, age 53, unknown 29.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 25.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 25.7
Samples: 139

Max nTPM: 74.5
Min nTPM: 5.7
Std nTPM: 12.7
Median nTPM: 21.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 74.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 67.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 63.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 62.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 61.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 57.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.2
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 48.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 47.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 45.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 45.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 123.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.4
FF:10158-103A5 76 years, female 123.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 38.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.2
Samples: 4

Max nTPM: 48.7
Min nTPM: 27.4
Sample A Female 27.4
Sample B Female 27.6
Sample C Male 48.7
Sample D Male 41.0
Periaqueductal gray
nTPM: 27.7
Samples: 3

Max nTPM: 34.8
Min nTPM: 22.9
Sample B Female 25.3
Sample C Male 34.8
Sample D Male 22.9
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 44.7
Min nTPM: 21.5
Sample A Female 43.3
Sample B Female 23.2
Sample C Male 44.7
Sample D Male 21.5
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 49.6
Min nTPM: 21.5
Sample A Female 45.7
Sample B Female 21.5
Sample C Male 49.6
Sample D Male 38.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 71.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 71.7
Samples: 4

Max nTPM: 74.2
Min nTPM: 68.6
Sample A Male 68.6
Sample B Male 72.5
Sample C Female 74.2
Sample D Female 71.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
1123 Antisense, RP_040315_01_20, Mouse strain C57BL/6J (56 days, male) 0.8
1122 Antisense, RP_040315_01_20, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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