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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:42.1 nTPM
HPA:42.1 nTPM
GTEx:25.4 nTPM
FANTOM5:140.9 Scaled Tags Per Million
Pig:29.6 nTPM
Mouse:61.2 nTPM
Allen mouse:1.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA017936Antibody HPA018950Antibody HPA018954
Glial cells MediumNot detectedLow
Neuronal cells MediumHighHigh







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.1
Sample id Sample description nTPM
Hippocampus
nTPM: 34.8
1898 Male, age 80, left hemisphere 41.0
2621 Female, age 67, right hemisphere 39.3
1855 Male, age 76, left hemisphere 34.2
1911 Female, age 85, right hemisphere 32.0
2529 Female, age 94, left hemisphere 32.0
2148 Female, age 91, left hemisphere 30.4
Dentate gyrus
nTPM: 34.3
1927 Female, age 91, both hemispheres 40.4
2010 Male, age 76, both hemispheres 37.6
2530 Female, age 94, left hemisphere 36.0
2246 Female, age 85, both hemispheres 32.5
2528 Male, age 74, both hemispheres 30.2
2531 Female, age 67, both hemispheres 28.8
Entorhinal gyrus
nTPM: 34.3
2764 Male, age 80, right hemisphere 40.4
1938 Female, age 85, left hemisphere 39.0
1787 Male, age 76, left hemisphere 34.7
2613 Female, age 94, left hemisphere 31.7
2686 Male, age 75, right hemisphere 29.9
2117 Female, age 91, right hemisphere 29.8
Hippocampus, CA1
nTPM: 39.7
2749 Male, age 80, left hemisphere 66.7
1873 Female, age 85, both hemispheres 36.4
2527 Male, age 74, both hemispheres 35.0
2045 Male, age 76, both hemispheres 30.7
2082 Female, age 91, right hemisphere 29.8
Hippocampus, CA2
nTPM: 36.3
1963 Male, age 80, left hemisphere 44.9
1892 Male, age 76, both hemispheres 43.8
2249 Male, age 74, both hemispheres 36.4
2437 Female, age 94, left hemisphere 31.6
1940 Female, age 85, left hemisphere 31.2
2113 Female, age 91, right hemisphere 29.8
Hippocampus, CA3
nTPM: 38.0
2137 Male, age 80, left hemisphere 54.3
1867 Male, age 76, both hemispheres 39.9
2436 Male, age 74, both hemispheres 38.3
2620 Female, age 94, left hemisphere 33.8
1891 Female, age 85, both hemispheres 33.4
2861 Female, age 67, both hemispheres 28.3
Parahippocampal cortex
nTPM: 35.2
1850 Male, age 80, both hemispheres 44.2
1990 Female, age 91, right hemisphere 39.8
2245 Female, age 91, both hemispheres 37.4
1933 Female, age 85, both hemispheres 35.8
2250 Female, age 67, right hemisphere 35.2
2532 Female, age 72, left hemisphere 34.1
2018 Male, age 76, both hemispheres 33.1
2692 Male, age 74, both hemispheres 31.2
2693 Female, age 94, both hemispheres 31.1
2622 Female, age 67, right hemisphere 30.1
Perirhinal gyrus
nTPM: 42.1
1847 Female, age 91, left hemisphere 49.1
1794 Male, age 80, right hemisphere 46.2
1841 Female, age 85, right hemisphere 42.9
2848 Male, age 76, right hemisphere 37.6
2521 Female, age 94, right hemisphere 34.7
Subiculum
nTPM: 33.4
1901 Male, age 80, both hemispheres 42.1
1977 Female, age 85, both hemispheres 36.3
2042 Male, age 76, both hemispheres 33.7
2438 Female, age 94, left hemisphere 31.6
2619 Male, age 74, both hemispheres 30.3
2729 Female, age 91, right hemisphere 26.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 25.4
Samples: 197

Max nTPM: 62.5
Min nTPM: 5.7
Std nTPM: 11.4
Median nTPM: 22.3
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 62.5
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 62.4
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 56.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 54.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 50.2
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 49.3
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 49.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 47.5
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 45.8
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 45.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 44.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 140.9
FF:10169-103B7 60 years, female 185.2
FF:10153-102I9 76 years, female 96.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 29.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 29.7
Samples: 4

Max nTPM: 39.5
Min nTPM: 21.3
Sample A Female 39.5
Sample B Female 29.0
Sample C Male 28.8
Sample D Male 21.3
Entorhinal cortex
nTPM: 26.0
Samples: 4

Max nTPM: 29.8
Min nTPM: 22.3
Sample A Female 29.8
Sample B Female 26.9
Sample C Male 24.9
Sample D Male 22.3
Subiculum
nTPM: 24.4
Samples: 4

Max nTPM: 30.1
Min nTPM: 21.3
Sample A Female 30.1
Sample B Female 21.4
Sample C Male 24.9
Sample D Male 21.3
Ventral hippocampus
nTPM: 29.0
Samples: 4

Max nTPM: 37.8
Min nTPM: 17.5
Sample A Female 32.8
Sample B Female 17.5
Sample C Male 37.8
Sample D Male 27.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 61.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 59.6
Samples: 4

Max nTPM: 64.8
Min nTPM: 56.2
Sample A Male 57.9
Sample B Male 59.3
Sample C Female 56.2
Sample D Female 64.8
Hippocampal formation
nTPM: 61.3
Samples: 4

Max nTPM: 64.7
Min nTPM: 58.3
Sample A Male 58.3
Sample B Male 63.5
Sample C Female 64.7
Sample D Female 58.5

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.0
1123 Antisense, RP_040315_01_20, Mouse strain C57BL/6J (56 days, male) 1.0
1122 Antisense, RP_040315_01_20, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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