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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:48.3 nTPM
HPA:48.3 nTPM
GTEx:34.6 nTPM
FANTOM5:113.2 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:0.4 nTPM
Allen mouse:5.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB025842
Glial cells Medium
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 48.3
Sample id Sample description nTPM
Hippocampus
nTPM: 48.3
2529 Female, age 94, left hemisphere 60.3
1898 Male, age 80, left hemisphere 59.8
1911 Female, age 85, right hemisphere 50.4
2148 Female, age 91, left hemisphere 46.6
1855 Male, age 76, left hemisphere 40.9
2621 Female, age 67, right hemisphere 32.0
Dentate gyrus
nTPM: 43.2
2528 Male, age 74, both hemispheres 71.5
2530 Female, age 94, left hemisphere 46.8
2246 Female, age 85, both hemispheres 39.0
2010 Male, age 76, both hemispheres 38.7
2531 Female, age 67, both hemispheres 36.1
1927 Female, age 91, both hemispheres 27.3
Entorhinal gyrus
nTPM: 36.7
2117 Female, age 91, right hemisphere 79.0
1787 Male, age 76, left hemisphere 34.5
2686 Male, age 75, right hemisphere 30.0
2764 Male, age 80, right hemisphere 28.3
1938 Female, age 85, left hemisphere 26.9
2613 Female, age 94, left hemisphere 21.7
Hippocampus, CA1
nTPM: 39.6
1873 Female, age 85, both hemispheres 59.8
2527 Male, age 74, both hemispheres 45.0
2082 Female, age 91, right hemisphere 37.0
2045 Male, age 76, both hemispheres 33.8
2749 Male, age 80, left hemisphere 22.2
Hippocampus, CA2
nTPM: 38.7
2249 Male, age 74, both hemispheres 50.8
2437 Female, age 94, left hemisphere 47.7
2113 Female, age 91, right hemisphere 41.1
1963 Male, age 80, left hemisphere 35.7
1940 Female, age 85, left hemisphere 32.7
1892 Male, age 76, both hemispheres 24.2
Hippocampus, CA3
nTPM: 35.7
1891 Female, age 85, both hemispheres 49.1
2620 Female, age 94, left hemisphere 45.0
2436 Male, age 74, both hemispheres 37.7
2861 Female, age 67, both hemispheres 28.8
2137 Male, age 80, left hemisphere 27.7
1867 Male, age 76, both hemispheres 26.1
Parahippocampal cortex
nTPM: 29.1
2250 Female, age 67, right hemisphere 47.7
2245 Female, age 91, both hemispheres 30.7
1933 Female, age 85, both hemispheres 30.2
2018 Male, age 76, both hemispheres 30.1
1990 Female, age 91, right hemisphere 29.0
2692 Male, age 74, both hemispheres 27.1
1850 Male, age 80, both hemispheres 25.8
2693 Female, age 94, both hemispheres 25.1
2532 Female, age 72, left hemisphere 24.7
2622 Female, age 67, right hemisphere 21.2
Perirhinal gyrus
nTPM: 26.4
2521 Female, age 94, right hemisphere 31.3
1794 Male, age 80, right hemisphere 28.2
2848 Male, age 76, right hemisphere 25.2
1841 Female, age 85, right hemisphere 24.4
1847 Female, age 91, left hemisphere 23.1
Subiculum
nTPM: 41.6
2729 Female, age 91, right hemisphere 74.3
2042 Male, age 76, both hemispheres 42.1
1901 Male, age 80, both hemispheres 38.7
2619 Male, age 74, both hemispheres 37.7
1977 Female, age 85, both hemispheres 31.2
2438 Female, age 94, left hemisphere 25.7

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 34.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 34.6
Samples: 197

Max nTPM: 207.7
Min nTPM: 1.2
Std nTPM: 28.7
Median nTPM: 25.4
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 207.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 142.4
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 142.1
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 112.0
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 103.9
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 100.7
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 100.2
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 98.9
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 95.3
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 88.1
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 86.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 113.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 113.2
FF:10153-102I9 76 years, female 160.5
FF:10169-103B7 60 years, female 65.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.6
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 13.2
Samples: 4

Max nTPM: 25.1
Min nTPM: 6.0
Sample A Female 13.6
Sample B Female 6.0
Sample C Male 25.1
Sample D Male 7.9
Entorhinal cortex
nTPM: 21.6
Samples: 4

Max nTPM: 51.8
Min nTPM: 5.4
Sample A Female 51.8
Sample B Female 9.9
Sample C Male 19.1
Sample D Male 5.4
Subiculum
nTPM: 18.4
Samples: 4

Max nTPM: 29.6
Min nTPM: 9.7
Sample A Female 29.6
Sample B Female 9.7
Sample C Male 16.2
Sample D Male 17.9
Ventral hippocampus
nTPM: 18.3
Samples: 4

Max nTPM: 35.8
Min nTPM: 5.9
Sample A Female 35.8
Sample B Female 7.7
Sample C Male 23.9
Sample D Male 5.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 0.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 0.4
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.2
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.7
Sample D Female 0.5
Hippocampal formation
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.3
Sample A Male 0.7
Sample B Male 0.4
Sample C Female 0.4
Sample D Female 0.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 5.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 5.1
1662 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 5.1
1661 Antisense, RP_040507_02_F08, Mouse strain C57BL/6J (56 days, male) 2.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.