ABOUTMENU
HELP
NEWS
PDGFRA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA:11.9 nTPM
GTEx:15.4 nTPM
FANTOM5:51.3 Scaled Tags Per Million
Pig:20.3 nTPM
Mouse:23.8 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.5
2219 Male, age 76, both hemispheres 18.9
1830 Male, age 51, unknown 8.6
1827 Male, age 72, unknown 8.4
1870 Female, age 42, unknown 8.2
1833 Male, age 53, unknown 7.8
2411 Female, age 72, unknown 7.5
2828 Female, age 72, unknown 7.1
2019 Male, age 18, unknown 6.3
2666 Male, age 74, left hemisphere 1.7
2586 Male, age 75, left hemisphere 0.7
Dorsal raphe nucleus
nTPM: 6.7
2016 Female, age 72, unknown 8.4
2750 Male, age 76, both hemispheres 8.4
2047 Male, age 72, unknown 7.0
2298 Female, age 72, unknown 4.9
1828 Male, age 53, unknown 4.6
Inferior colliculus
nTPM: 7.8
1890 Male, age 53, unknown 8.7
2849 Male, age 72, unknown 8.6
2097 Female, age 72, unknown 7.3
1848 Female, age 42, unknown 6.4
Median raphe nucleus
nTPM: 3.2
2220 Male, age 76, midline 3.2
Pedunculopontine tegmental nucleus
nTPM: 11.9
1921 Female, age 85, both hemispheres 12.3
2338 Male, age 61, both hemispheres 12.1
2334 Male, age 80, both hemispheres 11.2
Periaquaductal grey, anterior
nTPM: 7.2
2502 Female, age 75, unknown 12.2
1947 Male, age 18, unknown 5.0
1795 Male, age 51, unknown 4.4
Periaquaductal grey, dorsal
nTPM: 8.6
1840 Male, age 53, unknown 10.3
2850 Male, age 76, both hemispheres 8.8
1831 Male, age 72, unknown 7.9
2464 Female, age 72, unknown 7.4
Periaquaductal grey, lateral
nTPM: 7.9
2140 Male, age 76, both hemispheres 8.9
2053 Male, age 18, unknown 7.8
2272 Male, age 74, both hemispheres 7.0
Pretectal area
nTPM: 7.4
2667 Female, age 75, unknown 12.6
2316 Male, age 76, right hemisphere 11.4
2224 Female, age 72, unknown 9.4
1815 Male, age 53, unknown 7.9
2825 Male, age 18, unknown 6.9
1944 Female, age 72, unknown 6.7
2273 Male, age 74, both hemispheres 6.5
1817 Female, age 42, unknown 6.4
2407 Male, age 75, both hemispheres 5.7
1816 Male, age 51, unknown 4.8
2007 Male, age 72, unknown 3.1
Red nucleus
nTPM: 7.2
2823 Male, age 76, right hemisphere 11.3
2588 Male, age 74, left hemisphere 9.4
2503 Female, age 72, unknown 9.2
1904 Male, age 53, unknown 8.2
1954 Female, age 42, unknown 8.2
1865 Male, age 51, unknown 7.6
2769 Male, age 72, unknown 7.0
2227 Male, age 72, unknown 6.9
1821 Female, age 72, unknown 5.9
2785 Male, age 18, unknown 5.5
2725 Female, age 75, unknown 4.1
2584 Male, age 75, left hemisphere 3.3
Substantia nigra
nTPM: 7.4
2699 Male, age 18, unknown 18.4
2665 Male, age 74, both hemispheres 10.9
2409 Female, age 72, unknown 8.9
2241 Male, age 72, unknown 7.9
1851 Male, age 51, unknown 7.0
1889 Female, age 72, unknown 5.9
2590 Female, age 75, unknown 4.9
1941 Male, age 53, unknown 3.7
2583 Male, age 75, right hemisphere 3.3
1916 Female, age 42, unknown 3.0
Superior colliculus
nTPM: 6.9
1895 Male, age 76, right hemisphere 12.8
1913 Female, age 42, unknown 8.8
1839 Male, age 51, unknown 8.7
1995 Male, age 72, unknown 8.5
2587 Male, age 74, left hemisphere 7.1
2087 Female, age 72, unknown 6.9
1796 Male, age 53, unknown 6.3
2668 Female, age 75, unknown 3.3
2664 Male, age 75, both hemispheres 3.2
2261 Male, age 18, unknown 3.1
Ventral tegmental area
nTPM: 7.5
2021 Male, age 53, unknown 8.6
1942 Male, age 51, unknown 8.5
2223 Female, age 72, unknown 8.1
2218 Male, age 76, both hemispheres 7.3
1915 Female, age 42, unknown 6.7
2410 Female, age 72, unknown 5.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.4
Samples: 139

Max nTPM: 46.8
Min nTPM: 0.8
Std nTPM: 7.6
Median nTPM: 14.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 46.8
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 45.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 36.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.6
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 31.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 28.6
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 27.5
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 27.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 26.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 26.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 25.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 51.3
FF:10158-103A5 76 years, female 51.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.3
Pig sample Sample description nTPM
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 24.1
Min nTPM: 11.7
Sample A Female 20.3
Sample B Female 24.1
Sample C Male 24.0
Sample D Male 11.7
Periaqueductal gray
nTPM: 18.1
Samples: 3

Max nTPM: 24.9
Min nTPM: 14.2
Sample B Female 24.9
Sample C Male 15.2
Sample D Male 14.2
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 21.9
Min nTPM: 19.1
Sample A Female 20.4
Sample B Female 21.9
Sample C Male 19.1
Sample D Male 20.0
Superior colliculi
nTPM: 15.9
Samples: 4

Max nTPM: 19.6
Min nTPM: 12.1
Sample A Female 16.6
Sample B Female 12.1
Sample C Male 19.6
Sample D Male 15.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 26.0
Min nTPM: 21.3
Sample A Male 23.3
Sample B Male 21.3
Sample C Female 26.0
Sample D Female 24.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
79354743 Antisense, RP_070208_04_B08, Mouse strain C57BL/6J (56 days, male) 2.1
77280309 Antisense, RP_070116_01_B01, Mouse strain C57BL/6J (56 days, male) 1.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.