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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni
Consensus:72.1 nTPM
HPA:72.1 nTPM
GTEx:58.5 nTPM
FANTOM5:97.6 Scaled Tags Per Million
Pig:30.3 nTPM
Mouse:54.4 nTPM
Allen mouse:6.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA010638Antibody HPA011929Antibody CAB015341
Glial cells HighLowLow
Neuronal cells HighLowMedium







HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 72.1
Sample id Sample description nTPM
Hippocampus
nTPM: 69.2
2529 Female, age 94, left hemisphere 74.1
1898 Male, age 80, left hemisphere 70.5
2148 Female, age 91, left hemisphere 69.4
1855 Male, age 76, left hemisphere 68.3
1911 Female, age 85, right hemisphere 66.5
2621 Female, age 67, right hemisphere 66.3
Dentate gyrus
nTPM: 68.0
2528 Male, age 74, both hemispheres 71.8
2246 Female, age 85, both hemispheres 70.5
2010 Male, age 76, both hemispheres 68.9
2530 Female, age 94, left hemisphere 68.2
2531 Female, age 67, both hemispheres 65.3
1927 Female, age 91, both hemispheres 63.3
Entorhinal gyrus
nTPM: 67.9
2117 Female, age 91, right hemisphere 73.4
1938 Female, age 85, left hemisphere 71.4
2764 Male, age 80, right hemisphere 68.5
1787 Male, age 76, left hemisphere 66.3
2686 Male, age 75, right hemisphere 65.6
2613 Female, age 94, left hemisphere 62.5
Hippocampus, CA1
nTPM: 68.0
1873 Female, age 85, both hemispheres 69.5
2527 Male, age 74, both hemispheres 69.0
2045 Male, age 76, both hemispheres 68.7
2082 Female, age 91, right hemisphere 67.4
2749 Male, age 80, left hemisphere 65.4
Hippocampus, CA2
nTPM: 67.1
2113 Female, age 91, right hemisphere 69.2
2249 Male, age 74, both hemispheres 68.4
1940 Female, age 85, left hemisphere 67.6
2437 Female, age 94, left hemisphere 67.5
1892 Male, age 76, both hemispheres 67.0
1963 Male, age 80, left hemisphere 62.7
Hippocampus, CA3
nTPM: 68.8
2436 Male, age 74, both hemispheres 73.7
2861 Female, age 67, both hemispheres 69.5
2620 Female, age 94, left hemisphere 68.7
1867 Male, age 76, both hemispheres 67.5
1891 Female, age 85, both hemispheres 67.0
2137 Male, age 80, left hemisphere 66.4
Parahippocampal cortex
nTPM: 67.2
1933 Female, age 85, both hemispheres 71.6
1850 Male, age 80, both hemispheres 71.0
2250 Female, age 67, right hemisphere 68.0
2018 Male, age 76, both hemispheres 67.6
2622 Female, age 67, right hemisphere 67.6
2245 Female, age 91, both hemispheres 67.5
2693 Female, age 94, both hemispheres 66.2
2692 Male, age 74, both hemispheres 64.9
1990 Female, age 91, right hemisphere 64.4
2532 Female, age 72, left hemisphere 63.6
Perirhinal gyrus
nTPM: 72.1
1841 Female, age 85, right hemisphere 75.9
2848 Male, age 76, right hemisphere 73.9
1794 Male, age 80, right hemisphere 73.0
1847 Female, age 91, left hemisphere 69.1
2521 Female, age 94, right hemisphere 68.6
Subiculum
nTPM: 66.6
2729 Female, age 91, right hemisphere 70.7
1977 Female, age 85, both hemispheres 69.0
2619 Male, age 74, both hemispheres 67.1
2438 Female, age 94, left hemisphere 66.2
2042 Male, age 76, both hemispheres 63.4
1901 Male, age 80, both hemispheres 63.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 58.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 58.5
Samples: 197

Max nTPM: 118.3
Min nTPM: 33.5
Std nTPM: 11.1
Median nTPM: 57.2
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 118.3
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 86.4
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 85.7
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 85.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 84.0
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 82.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 81.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 80.0
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 79.8
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 79.1
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 77.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 97.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 97.6
FF:10153-102I9 76 years, female 109.4
FF:10169-103B7 60 years, female 85.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 30.3
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 26.5
Samples: 4

Max nTPM: 30.7
Min nTPM: 20.4
Sample A Female 27.2
Sample B Female 27.5
Sample C Male 30.7
Sample D Male 20.4
Entorhinal cortex
nTPM: 29.7
Samples: 4

Max nTPM: 33.3
Min nTPM: 25.4
Sample A Female 27.9
Sample B Female 32.2
Sample C Male 33.3
Sample D Male 25.4
Subiculum
nTPM: 30.3
Samples: 4

Max nTPM: 36.3
Min nTPM: 26.1
Sample A Female 36.3
Sample B Female 30.2
Sample C Male 28.6
Sample D Male 26.1
Ventral hippocampus
nTPM: 27.1
Samples: 4

Max nTPM: 31.5
Min nTPM: 24.1
Sample A Female 28.2
Sample B Female 24.6
Sample C Male 31.5
Sample D Male 24.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 54.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 18.6
Samples: 4

Max nTPM: 27.1
Min nTPM: 12.9
Sample A Male 19.3
Sample B Male 12.9
Sample C Female 27.1
Sample D Female 15.1
Hippocampal formation
nTPM: 54.4
Samples: 4

Max nTPM: 65.5
Min nTPM: 45.6
Sample A Male 45.6
Sample B Male 58.9
Sample C Female 65.5
Sample D Female 47.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.2
69080045 Antisense, RP_050324_01_F08, Mouse strain C57BL/6J (56 days, male) 6.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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