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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:47.4 nTPM
HPA:47.4 nTPM
GTEx:47.7 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:0.0 nTPM

CAUDATE - Antibody stainingi
Antibody HPA042789
Glial cells Not detected
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 47.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 43.5
2288 Male, age 75, left hemisphere 46.5
2481 Female, age 94, left hemisphere 44.4
1854 Male, age 80, left hemisphere 44.0
2846 Female, age 79, unknown 43.9
1781 Male, age 74, unknown 42.9
2290 Female, age 72, unknown 42.8
1857 Female, age 85, left hemisphere 42.7
2289 Male, age 61, right hemisphere 40.8
Claustrum
nTPM: 43.3
2392 Female, age 94, both hemispheres 47.4
2284 Female, age 91, both hemispheres 45.9
2198 Male, age 80, both hemispheres 45.8
2491 Male, age 75, both hemispheres 43.1
1956 Male, age 74, unknown 43.0
2568 Male, age 61, both hemispheres 42.8
2196 Female, age 79, unknown 41.9
2645 Female, age 72, unknown 40.4
2292 Female, age 85, both hemispheres 39.2
Globus pallidus, externus
nTPM: 41.5
2772 Female, age 79, unknown 47.8
2395 Male, age 75, both hemispheres 44.2
1996 Male, age 80, right hemisphere 42.0
2646 Male, age 61, right hemisphere 37.0
2567 Female, age 72, unknown 36.7
Globus pallidus, internus
nTPM: 43.5
2287 Male, age 75, right hemisphere 52.7
2483 Female, age 94, right hemisphere 46.1
1818 Male, age 74, unknown 45.3
2778 Female, age 91, both hemispheres 43.5
2037 Male, age 80, right hemisphere 40.9
2111 Female, age 85, right hemisphere 39.1
2566 Female, age 72, unknown 37.0
Nucleus accumbens
nTPM: 47.2
1856 Female, age 91, right hemisphere 56.1
2824 Male, age 61, right hemisphere 55.0
2286 Male, age 75, left hemisphere 48.7
2698 Female, age 72, unknown 45.6
1806 Female, age 85, left hemisphere 44.3
1783 Male, age 74, unknown 43.7
2391 Female, age 94, left hemisphere 43.6
2732 Male, age 80, right hemisphere 40.7
Nucleus basalis of Meynert
nTPM: 41.5
2393 Male, age 80, right hemisphere 45.2
2484 Female, age 94, left hemisphere 43.6
2821 Male, age 75, both hemispheres 40.6
2569 Male, age 61, both hemispheres 36.4
Nucleus of the diagonal band
nTPM: 47.4
2775 Male, age 80, right hemisphere 51.0
1812 Female, age 91, both hemispheres 49.8
2029 Male, age 61, right hemisphere 47.1
2195 Female, age 85, both hemispheres 46.3
1979 Male, age 74, unknown 42.8
Olfactory tubercle
nTPM: 47.2
1998 Female, age 91, both hemispheres 48.4
2487 Female, age 94, left hemisphere 48.0
1846 Male, age 80, right hemisphere 47.6
2856 Male, age 75, right hemisphere 44.8
Putamen
nTPM: 44.9
1937 Female, age 91, right hemisphere 49.8
2466 Female, age 79, unknown 47.5
1838 Male, age 80, right hemisphere 47.3
1829 Male, age 74, unknown 44.2
2482 Female, age 94, left hemisphere 43.7
2647 Male, age 75, left hemisphere 42.9
2489 Female, age 72, unknown 39.1
Septal nuclei
nTPM: 43.8
2031 Female, age 72, unknown 48.4
1960 Male, age 74, unknown 47.2
2009 Female, age 91, both hemispheres 46.9
2629 Female, age 94, right hemisphere 42.8
2199 Male, age 80, right hemisphere 41.5
2394 Male, age 61, left hemisphere 40.3
2059 Female, age 85, both hemispheres 39.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 41.5
Samples: 246

Max nTPM: 89.2
Min nTPM: 24.1
Std nTPM: 9.7
Median nTPM: 38.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 89.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 75.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 72.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 70.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 69.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 68.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 67.2
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 65.0
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 64.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 64.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 63.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 47.7
Samples: 246

Max nTPM: 78.4
Min nTPM: 25.5
Std nTPM: 10.8
Median nTPM: 46.3
GTEX-1B996-0011-R6b-SM-793AQ 60-69 years, male 78.4
GTEX-1JMLX-0011-R6b-SM-EXUT9 50-59 years, male 77.0
GTEX-QMR6-0011-R6A-SM-32PKP 50-59 years, male 76.3
GTEX-131XH-0011-R6a-SM-5KM2G 50-59 years, male 74.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 74.0
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 73.5
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 71.9
GTEX-1OJC4-0011-R6a-SM-EXOIM 50-59 years, female 71.9
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 70.4
GTEX-145MH-0011-R6a-SM-5PNZ7 50-59 years, male 69.6
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 69.6
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Brain - Putamen (basal ganglia)
Average nTPM: 42.8
Samples: 205

Max nTPM: 94.5
Min nTPM: 23.6
Std nTPM: 9.1
Median nTPM: 41.2
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 94.5
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 76.0
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 68.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 64.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 61.2
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 60.8
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 60.2
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 59.9
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 59.4
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 58.8
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 58.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 42.1
FF:10164-103B2 76 years, female 42.1
Globus pallidus
Scaled Tags Per Million: 28.6
FF:10175-103C4 60 years, female 29.2
FF:10161-103A8 76 years, female 28.1
Nucleus accumbens
Scaled Tags Per Million: 29.5
FF:10037-101F1 23-56 years, mixed 29.5
Putamen
Scaled Tags Per Million: 41.7
FF:10176-103C5 60 years, female 41.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.1
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Ventral pallidum
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.2
Sample C Male 0.0
Sample D Male 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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