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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:28.8 nTPM
HPA:28.8 nTPM
GTEx:30.3 nTPM
FANTOM5:65.0 Scaled Tags Per Million
Pig:0.0 nTPM
Mouse:58.7 nTPM

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 28.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 24.7
2586 Male, age 75, left hemisphere 26.6
1827 Male, age 72, unknown 26.5
2828 Female, age 72, unknown 25.2
2666 Male, age 74, left hemisphere 24.9
1833 Male, age 53, unknown 24.8
2219 Male, age 76, both hemispheres 24.5
1870 Female, age 42, unknown 24.3
2019 Male, age 18, unknown 23.4
2411 Female, age 72, unknown 23.4
1830 Male, age 51, unknown 22.9
Dorsal raphe nucleus
nTPM: 24.0
2298 Female, age 72, unknown 25.9
2750 Male, age 76, both hemispheres 25.6
1828 Male, age 53, unknown 23.9
2047 Male, age 72, unknown 23.4
2016 Female, age 72, unknown 21.0
Inferior colliculus
nTPM: 23.9
2097 Female, age 72, unknown 25.2
1848 Female, age 42, unknown 24.1
1890 Male, age 53, unknown 23.3
2849 Male, age 72, unknown 23.1
Median raphe nucleus
nTPM: 28.8
2220 Male, age 76, midline 28.8
Pedunculopontine tegmental nucleus
nTPM: 24.7
2334 Male, age 80, both hemispheres 26.6
2338 Male, age 61, both hemispheres 24.1
1921 Female, age 85, both hemispheres 23.5
Periaquaductal grey, anterior
nTPM: 25.1
1947 Male, age 18, unknown 26.7
1795 Male, age 51, unknown 24.6
2502 Female, age 75, unknown 24.1
Periaquaductal grey, dorsal
nTPM: 25.2
2850 Male, age 76, both hemispheres 28.6
1831 Male, age 72, unknown 26.1
1840 Male, age 53, unknown 24.1
2464 Female, age 72, unknown 21.9
Periaquaductal grey, lateral
nTPM: 25.5
2272 Male, age 74, both hemispheres 26.5
2140 Male, age 76, both hemispheres 25.5
2053 Male, age 18, unknown 24.7
Pretectal area
nTPM: 27.9
1816 Male, age 51, unknown 35.6
1817 Female, age 42, unknown 31.2
1944 Female, age 72, unknown 30.7
2667 Female, age 75, unknown 28.2
1815 Male, age 53, unknown 27.8
2273 Male, age 74, both hemispheres 27.3
2007 Male, age 72, unknown 27.2
2224 Female, age 72, unknown 26.4
2825 Male, age 18, unknown 25.1
2407 Male, age 75, both hemispheres 24.3
2316 Male, age 76, right hemisphere 23.6
Red nucleus
nTPM: 26.2
1821 Female, age 72, unknown 29.8
1954 Female, age 42, unknown 29.1
1904 Male, age 53, unknown 28.3
2503 Female, age 72, unknown 27.6
2725 Female, age 75, unknown 26.8
2227 Male, age 72, unknown 26.4
1865 Male, age 51, unknown 26.2
2769 Male, age 72, unknown 25.3
2785 Male, age 18, unknown 25.1
2823 Male, age 76, right hemisphere 24.3
2584 Male, age 75, left hemisphere 24.2
2588 Male, age 74, left hemisphere 21.0
Substantia nigra
nTPM: 26.2
1916 Female, age 42, unknown 28.8
2583 Male, age 75, right hemisphere 28.4
1889 Female, age 72, unknown 27.6
1851 Male, age 51, unknown 27.3
2699 Male, age 18, unknown 26.8
1941 Male, age 53, unknown 26.2
2241 Male, age 72, unknown 26.2
2590 Female, age 75, unknown 24.8
2409 Female, age 72, unknown 23.5
2665 Male, age 74, both hemispheres 22.5
Superior colliculus
nTPM: 26.4
2087 Female, age 72, unknown 30.6
2261 Male, age 18, unknown 30.2
2668 Female, age 75, unknown 27.6
1796 Male, age 53, unknown 27.4
1913 Female, age 42, unknown 26.6
1995 Male, age 72, unknown 25.8
2664 Male, age 75, both hemispheres 25.6
2587 Male, age 74, left hemisphere 24.0
1839 Male, age 51, unknown 23.5
1895 Male, age 76, right hemisphere 23.0
Ventral tegmental area
nTPM: 26.9
2223 Female, age 72, unknown 29.4
2218 Male, age 76, both hemispheres 29.1
1915 Female, age 42, unknown 27.7
2410 Female, age 72, unknown 25.8
2021 Male, age 53, unknown 24.9
1942 Male, age 51, unknown 24.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.3
Samples: 139

Max nTPM: 79.1
Min nTPM: 18.8
Std nTPM: 7.2
Median nTPM: 29.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 79.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 52.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 48.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 46.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 45.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 40.8
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 40.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 39.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 38.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 38.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 65.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 65.0
FF:10158-103A5 76 years, female 65.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 0.0
Pig sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Periaqueductal gray
nTPM: 0.0
Samples: 3

Max nTPM: 0.0
Min nTPM: 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Substantia nigra
nTPM: 0.0
Samples: 4

Max nTPM: 0.1
Min nTPM: 0.0
Sample A Female 0.1
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0
Superior colliculi
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Female 0.0
Sample B Female 0.0
Sample C Male 0.0
Sample D Male 0.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 58.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 58.7
Samples: 4

Max nTPM: 61.1
Min nTPM: 55.1
Sample A Male 55.1
Sample B Male 61.1
Sample C Female 60.6
Sample D Female 58.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.