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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:254.9 nTPM
HPA:254.9 nTPM
GTEx:248.7 nTPM
FANTOM5:94.6 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 254.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 246.6
1870 Female, age 42, unknown 253.9
2828 Female, age 72, unknown 251.8
1833 Male, age 53, unknown 248.5
2411 Female, age 72, unknown 247.7
1827 Male, age 72, unknown 247.3
1830 Male, age 51, unknown 246.5
2586 Male, age 75, left hemisphere 245.2
2019 Male, age 18, unknown 244.0
2666 Male, age 74, left hemisphere 241.9
2219 Male, age 76, both hemispheres 238.7
Dorsal raphe nucleus
nTPM: 247.7
1828 Male, age 53, unknown 250.8
2298 Female, age 72, unknown 249.2
2750 Male, age 76, both hemispheres 247.8
2016 Female, age 72, unknown 247.6
2047 Male, age 72, unknown 243.3
Inferior colliculus
nTPM: 247.4
1890 Male, age 53, unknown 248.5
2097 Female, age 72, unknown 248.1
1848 Female, age 42, unknown 246.5
2849 Male, age 72, unknown 246.4
Median raphe nucleus
nTPM: 243.0
2220 Male, age 76, midline 243.0
Pedunculopontine tegmental nucleus
nTPM: 250.9
2338 Male, age 61, both hemispheres 256.4
2334 Male, age 80, both hemispheres 251.2
1921 Female, age 85, both hemispheres 245.0
Periaquaductal grey, anterior
nTPM: 243.0
1947 Male, age 18, unknown 244.1
1795 Male, age 51, unknown 243.9
2502 Female, age 75, unknown 241.0
Periaquaductal grey, dorsal
nTPM: 245.0
2850 Male, age 76, both hemispheres 249.4
1831 Male, age 72, unknown 243.8
2464 Female, age 72, unknown 243.5
1840 Male, age 53, unknown 243.2
Periaquaductal grey, lateral
nTPM: 246.3
2272 Male, age 74, both hemispheres 248.5
2053 Male, age 18, unknown 246.8
2140 Male, age 76, both hemispheres 243.6
Pretectal area
nTPM: 245.6
2667 Female, age 75, unknown 250.7
2273 Male, age 74, both hemispheres 248.7
2825 Male, age 18, unknown 248.5
1817 Female, age 42, unknown 248.3
2407 Male, age 75, both hemispheres 245.7
1815 Male, age 53, unknown 245.5
2316 Male, age 76, right hemisphere 245.3
2007 Male, age 72, unknown 243.5
1944 Female, age 72, unknown 242.8
2224 Female, age 72, unknown 242.2
1816 Male, age 51, unknown 240.2
Red nucleus
nTPM: 254.9
1821 Female, age 72, unknown 265.2
2769 Male, age 72, unknown 262.7
1865 Male, age 51, unknown 262.2
2227 Male, age 72, unknown 257.5
2503 Female, age 72, unknown 256.1
1904 Male, age 53, unknown 256.0
1954 Female, age 42, unknown 255.5
2725 Female, age 75, unknown 252.3
2823 Male, age 76, right hemisphere 252.1
2785 Male, age 18, unknown 248.8
2588 Male, age 74, left hemisphere 246.8
2584 Male, age 75, left hemisphere 243.3
Substantia nigra
nTPM: 248.9
2699 Male, age 18, unknown 259.3
1916 Female, age 42, unknown 255.6
1851 Male, age 51, unknown 255.0
1889 Female, age 72, unknown 247.3
2583 Male, age 75, right hemisphere 247.3
1941 Male, age 53, unknown 246.5
2409 Female, age 72, unknown 246.5
2590 Female, age 75, unknown 245.6
2241 Male, age 72, unknown 244.4
2665 Male, age 74, both hemispheres 241.8
Superior colliculus
nTPM: 246.4
2587 Male, age 74, left hemisphere 253.6
1913 Female, age 42, unknown 252.0
1995 Male, age 72, unknown 249.4
2668 Female, age 75, unknown 248.0
1796 Male, age 53, unknown 247.1
1895 Male, age 76, right hemisphere 246.1
2664 Male, age 75, both hemispheres 243.3
1839 Male, age 51, unknown 243.1
2087 Female, age 72, unknown 241.0
2261 Male, age 18, unknown 240.3
Ventral tegmental area
nTPM: 251.6
1915 Female, age 42, unknown 257.5
2223 Female, age 72, unknown 255.2
2410 Female, age 72, unknown 253.0
2218 Male, age 76, both hemispheres 250.0
1942 Male, age 51, unknown 247.5
2021 Male, age 53, unknown 246.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 248.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 248.7
Samples: 139

Max nTPM: 626.9
Min nTPM: 132.2
Std nTPM: 69.9
Median nTPM: 238.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 626.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 579.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 427.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 425.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 408.9
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 408.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 380.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 376.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 371.4
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 348.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 334.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.6
FF:10158-103A5 76 years, female 94.6

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