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KCNH3
HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:30.6 nTPM
HPA:30.6 nTPM
GTEx:65.5 nTPM
FANTOM5:49.9 Scaled Tags Per Million
Pig:35.2 nTPM
Mouse:42.4 nTPM
Allen mouse:0.4 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.6
Sample id Sample description nTPM
Hippocampus
nTPM: 23.5
2529 Female, age 94, left hemisphere 30.4
1911 Female, age 85, right hemisphere 28.4
2621 Female, age 67, right hemisphere 27.6
2148 Female, age 91, left hemisphere 20.5
1898 Male, age 80, left hemisphere 20.3
1855 Male, age 76, left hemisphere 13.6
Dentate gyrus
nTPM: 17.1
2531 Female, age 67, both hemispheres 28.3
1927 Female, age 91, both hemispheres 22.1
2528 Male, age 74, both hemispheres 18.2
2246 Female, age 85, both hemispheres 16.0
2010 Male, age 76, both hemispheres 13.0
2530 Female, age 94, left hemisphere 4.8
Entorhinal gyrus
nTPM: 30.6
2613 Female, age 94, left hemisphere 60.0
2764 Male, age 80, right hemisphere 32.9
1787 Male, age 76, left hemisphere 26.9
2686 Male, age 75, right hemisphere 24.3
1938 Female, age 85, left hemisphere 23.8
2117 Female, age 91, right hemisphere 16.0
Hippocampus, CA1
nTPM: 29.8
2749 Male, age 80, left hemisphere 47.7
2527 Male, age 74, both hemispheres 37.5
2082 Female, age 91, right hemisphere 28.1
2045 Male, age 76, both hemispheres 23.6
1873 Female, age 85, both hemispheres 11.9
Hippocampus, CA2
nTPM: 21.8
2113 Female, age 91, right hemisphere 30.7
2249 Male, age 74, both hemispheres 29.4
2437 Female, age 94, left hemisphere 21.1
1940 Female, age 85, left hemisphere 20.5
1963 Male, age 80, left hemisphere 16.1
1892 Male, age 76, both hemispheres 12.7
Hippocampus, CA3
nTPM: 25.2
2137 Male, age 80, left hemisphere 49.5
2620 Female, age 94, left hemisphere 25.3
2861 Female, age 67, both hemispheres 22.7
2436 Male, age 74, both hemispheres 20.7
1867 Male, age 76, both hemispheres 19.1
1891 Female, age 85, both hemispheres 14.0
Parahippocampal cortex
nTPM: 26.3
2245 Female, age 91, both hemispheres 38.9
2622 Female, age 67, right hemisphere 33.8
2018 Male, age 76, both hemispheres 27.3
1990 Female, age 91, right hemisphere 26.7
2250 Female, age 67, right hemisphere 25.5
1933 Female, age 85, both hemispheres 23.2
2532 Female, age 72, left hemisphere 23.2
2693 Female, age 94, both hemispheres 23.1
1850 Male, age 80, both hemispheres 22.2
2692 Male, age 74, both hemispheres 19.1
Perirhinal gyrus
nTPM: 28.9
2521 Female, age 94, right hemisphere 36.7
1847 Female, age 91, left hemisphere 36.4
1794 Male, age 80, right hemisphere 27.0
2848 Male, age 76, right hemisphere 22.3
1841 Female, age 85, right hemisphere 22.1
Subiculum
nTPM: 20.6
1901 Male, age 80, both hemispheres 24.4
2619 Male, age 74, both hemispheres 21.6
1977 Female, age 85, both hemispheres 21.3
2729 Female, age 91, right hemisphere 20.6
2042 Male, age 76, both hemispheres 18.6
2438 Female, age 94, left hemisphere 16.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 65.5
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 65.5
Samples: 197

Max nTPM: 295.9
Min nTPM: 1.8
Std nTPM: 43.9
Median nTPM: 57.0
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 295.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 188.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 187.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 173.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 171.9
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 159.1
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 157.7
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 153.6
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 151.8
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 150.6
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 150.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 49.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 49.9
FF:10169-103B7 60 years, female 53.3
FF:10153-102I9 76 years, female 46.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 35.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 30.2
Samples: 4

Max nTPM: 36.8
Min nTPM: 18.3
Sample A Female 36.8
Sample B Female 29.7
Sample C Male 36.0
Sample D Male 18.3
Entorhinal cortex
nTPM: 35.2
Samples: 4

Max nTPM: 41.9
Min nTPM: 26.9
Sample A Female 37.4
Sample B Female 34.4
Sample C Male 41.9
Sample D Male 26.9
Subiculum
nTPM: 23.0
Samples: 4

Max nTPM: 29.0
Min nTPM: 16.7
Sample A Female 29.0
Sample B Female 18.9
Sample C Male 27.3
Sample D Male 16.7
Ventral hippocampus
nTPM: 31.8
Samples: 4

Max nTPM: 45.7
Min nTPM: 23.3
Sample A Female 26.3
Sample B Female 23.3
Sample C Male 31.8
Sample D Male 45.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 42.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 42.5
Samples: 4

Max nTPM: 50.7
Min nTPM: 32.3
Sample A Male 50.0
Sample B Male 50.7
Sample C Female 32.3
Sample D Female 36.8
Hippocampal formation
nTPM: 25.7
Samples: 4

Max nTPM: 27.4
Min nTPM: 22.2
Sample A Male 27.4
Sample B Male 26.7
Sample C Female 22.2
Sample D Female 26.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.4
74641310 Antisense, RP_060220_05_H06, Mouse strain C57BL/6J (56 days, male) 0.6
100145349 Antisense, RP_110519_02_H06, Mouse strain C57BL/6J (56 days, male) 0.1

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