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KCNH3
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:25.6 nTPM
HPA:25.6 nTPM
GTEx:40.5 nTPM
FANTOM5:60.1 Scaled Tags Per Million
Pig:22.4 nTPM
Mouse:47.6 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 25.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 13.6
2290 Female, age 72, unknown 17.5
2288 Male, age 75, left hemisphere 17.2
2289 Male, age 61, right hemisphere 16.6
1781 Male, age 74, unknown 15.1
1857 Female, age 85, left hemisphere 13.3
2846 Female, age 79, unknown 13.1
1854 Male, age 80, left hemisphere 10.4
2481 Female, age 94, left hemisphere 5.5
Claustrum
nTPM: 23.4
2645 Female, age 72, unknown 36.4
2491 Male, age 75, both hemispheres 32.0
2568 Male, age 61, both hemispheres 31.5
2284 Female, age 91, both hemispheres 27.5
1956 Male, age 74, unknown 21.4
2198 Male, age 80, both hemispheres 20.8
2392 Female, age 94, both hemispheres 16.3
2196 Female, age 79, unknown 13.4
2292 Female, age 85, both hemispheres 10.8
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.1
2483 Female, age 94, right hemisphere 1.1
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 6.5
1783 Male, age 74, unknown 13.0
1806 Female, age 85, left hemisphere 10.8
2286 Male, age 75, left hemisphere 10.3
2824 Male, age 61, right hemisphere 6.5
1856 Female, age 91, right hemisphere 6.3
2698 Female, age 72, unknown 3.3
2732 Male, age 80, right hemisphere 1.5
2391 Female, age 94, left hemisphere 0.6
Nucleus basalis of Meynert
nTPM: 6.9
2393 Male, age 80, right hemisphere 10.5
2484 Female, age 94, left hemisphere 10.0
2821 Male, age 75, both hemispheres 5.4
2569 Male, age 61, both hemispheres 1.8
Nucleus of the diagonal band
nTPM: 21.0
2029 Male, age 61, right hemisphere 33.3
2775 Male, age 80, right hemisphere 27.5
2195 Female, age 85, both hemispheres 22.8
1812 Female, age 91, both hemispheres 19.6
1979 Male, age 74, unknown 1.7
Olfactory tubercle
nTPM: 25.6
2487 Female, age 94, left hemisphere 29.5
1998 Female, age 91, both hemispheres 28.7
2856 Male, age 75, right hemisphere 24.8
1846 Male, age 80, right hemisphere 19.6
Putamen
nTPM: 14.1
2647 Male, age 75, left hemisphere 21.7
2489 Female, age 72, unknown 20.0
2466 Female, age 79, unknown 19.6
1829 Male, age 74, unknown 14.0
1838 Male, age 80, right hemisphere 10.7
1937 Female, age 91, right hemisphere 7.5
2482 Female, age 94, left hemisphere 5.3
Septal nuclei
nTPM: 17.7
1960 Male, age 74, unknown 36.8
2031 Female, age 72, unknown 25.0
2059 Female, age 85, both hemispheres 23.0
2629 Female, age 94, right hemisphere 19.1
2009 Female, age 91, both hemispheres 16.8
2394 Male, age 61, left hemisphere 3.0
2199 Male, age 80, right hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 40.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 40.5
Samples: 246

Max nTPM: 98.5
Min nTPM: 4.2
Std nTPM: 18.5
Median nTPM: 41.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 98.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 88.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 83.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 79.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 78.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 77.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 75.9
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 75.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 72.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 71.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 71.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 33.9
Samples: 246

Max nTPM: 80.0
Min nTPM: 1.3
Std nTPM: 15.0
Median nTPM: 35.7
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 80.0
GTEX-1I1CD-0011-R6b-SM-CJI3Y 60-69 years, female 74.8
GTEX-144GL-0011-R6a-SM-5P9HW 50-59 years, male 65.5
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 64.6
GTEX-14BIN-0011-R6a-SM-5S2RH 50-59 years, female 61.1
GTEX-13FHP-0011-R6b-SM-5LZY6 50-59 years, male 60.7
GTEX-1IDJH-0011-R6a-SM-A9SLZ 70-79 years, male 60.1
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 59.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 59.2
GTEX-13O3O-0011-R6b-SM-5P9GY 60-69 years, female 58.2
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 58.0
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Brain - Putamen (basal ganglia)
Average nTPM: 39.9
Samples: 205

Max nTPM: 91.2
Min nTPM: 1.5
Std nTPM: 19.1
Median nTPM: 41.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 91.2
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 89.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 85.5
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 79.3
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 76.7
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 74.1
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 74.0
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 72.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 72.4
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 71.7
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 70.7
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 60.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 22.7
FF:10164-103B2 76 years, female 22.7
Globus pallidus
Scaled Tags Per Million: 8.1
FF:10175-103C4 60 years, female 11.0
FF:10161-103A8 76 years, female 5.2
Nucleus accumbens
Scaled Tags Per Million: 60.1
FF:10037-101F1 23-56 years, mixed 60.1
Putamen
Scaled Tags Per Million: 20.0
FF:10176-103C5 60 years, female 20.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 22.4
Pig sample Sample description nTPM
Caudate
nTPM: 14.0
Samples: 4

Max nTPM: 20.0
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 12.3
Sample C Male 20.0
Sample D Male 16.5
Putamen
nTPM: 22.4
Samples: 4

Max nTPM: 47.0
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 18.7
Sample C Male 47.0
Sample D Male 20.9
Septum
nTPM: 4.7
Samples: 4

Max nTPM: 9.1
Min nTPM: 0.8
Sample A Female 5.3
Sample B Female 9.1
Sample C Male 0.8
Sample D Male 3.6
Ventral pallidum
nTPM: 8.2
Samples: 4

Max nTPM: 13.7
Min nTPM: 5.6
Sample A Female 7.0
Sample B Female 13.7
Sample C Male 5.6
Sample D Male 6.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 47.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 47.6
Samples: 4

Max nTPM: 60.8
Min nTPM: 38.7
Sample A Male 47.9
Sample B Male 60.8
Sample C Female 38.7
Sample D Female 42.9
Septum
nTPM: 10.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 6.8
Sample A Male 16.6
Sample B Male 7.4
Sample C Female 9.1
Sample D Female 6.8
Ventral forebrain
nTPM: 41.7
Samples: 4

Max nTPM: 47.9
Min nTPM: 33.5
Sample A Male 47.7
Sample B Male 33.5
Sample C Female 47.9
Sample D Female 37.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
74641310 Antisense, RP_060220_05_H06, Mouse strain C57BL/6J (56 days, male) 0.3
100145349 Antisense, RP_110519_02_H06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
100145349 Antisense, RP_110519_02_H06, Mouse strain C57BL/6J (56 days, male) 0.1
74641310 Antisense, RP_060220_05_H06, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.