ABOUTMENU
HELP
NEWS
HEY2
BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni
Consensus:12.0 nTPM
HPA:12.0 nTPM
GTEx:9.9 nTPM
FANTOM5:19.8 Scaled Tags Per Million
Pig:5.1 nTPM
Mouse:5.2 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA030205
Glial cells Medium
Neuronal cells Not detected



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 9.0
2288 Male, age 75, left hemisphere 12.3
2290 Female, age 72, unknown 10.9
2481 Female, age 94, left hemisphere 10.9
2289 Male, age 61, right hemisphere 8.6
1857 Female, age 85, left hemisphere 8.2
1854 Male, age 80, left hemisphere 7.6
2846 Female, age 79, unknown 7.0
1781 Male, age 74, unknown 6.6
Claustrum
nTPM: 6.7
2292 Female, age 85, both hemispheres 10.4
1956 Male, age 74, unknown 6.9
2568 Male, age 61, both hemispheres 6.8
2284 Female, age 91, both hemispheres 6.5
2198 Male, age 80, both hemispheres 6.3
2392 Female, age 94, both hemispheres 6.3
2645 Female, age 72, unknown 6.1
2491 Male, age 75, both hemispheres 6.0
2196 Female, age 79, unknown 5.3
Globus pallidus, externus
nTPM: 11.0
2567 Female, age 72, unknown 13.2
1996 Male, age 80, right hemisphere 12.6
2646 Male, age 61, right hemisphere 12.2
2395 Male, age 75, both hemispheres 9.2
2772 Female, age 79, unknown 8.0
Globus pallidus, internus
nTPM: 12.0
2566 Female, age 72, unknown 13.0
1818 Male, age 74, unknown 12.7
2287 Male, age 75, right hemisphere 12.2
2037 Male, age 80, right hemisphere 12.0
2483 Female, age 94, right hemisphere 11.8
2111 Female, age 85, right hemisphere 11.5
2778 Female, age 91, both hemispheres 11.0
Nucleus accumbens
nTPM: 8.5
2286 Male, age 75, left hemisphere 11.0
2391 Female, age 94, left hemisphere 10.0
2698 Female, age 72, unknown 9.9
1806 Female, age 85, left hemisphere 8.1
2732 Male, age 80, right hemisphere 7.9
1783 Male, age 74, unknown 7.6
2824 Male, age 61, right hemisphere 7.2
1856 Female, age 91, right hemisphere 6.2
Nucleus basalis of Meynert
nTPM: 9.2
2569 Male, age 61, both hemispheres 12.1
2821 Male, age 75, both hemispheres 9.1
2484 Female, age 94, left hemisphere 8.2
2393 Male, age 80, right hemisphere 7.6
Nucleus of the diagonal band
nTPM: 4.6
1979 Male, age 74, unknown 5.6
1812 Female, age 91, both hemispheres 4.9
2195 Female, age 85, both hemispheres 4.2
2775 Male, age 80, right hemisphere 4.2
2029 Male, age 61, right hemisphere 3.9
Olfactory tubercle
nTPM: 4.8
2856 Male, age 75, right hemisphere 5.5
1846 Male, age 80, right hemisphere 5.4
1998 Female, age 91, both hemispheres 4.2
2487 Female, age 94, left hemisphere 4.2
Putamen
nTPM: 9.0
2482 Female, age 94, left hemisphere 11.7
2647 Male, age 75, left hemisphere 11.3
2489 Female, age 72, unknown 11.0
1829 Male, age 74, unknown 9.0
1937 Female, age 91, right hemisphere 7.6
1838 Male, age 80, right hemisphere 6.6
2466 Female, age 79, unknown 6.0
Septal nuclei
nTPM: 5.7
2199 Male, age 80, right hemisphere 7.9
2394 Male, age 61, left hemisphere 7.2
2629 Female, age 94, right hemisphere 6.2
2009 Female, age 91, both hemispheres 5.0
2059 Female, age 85, both hemispheres 5.0
1960 Male, age 74, unknown 4.3
2031 Female, age 72, unknown 4.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 9.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 9.4
Samples: 246

Max nTPM: 20.1
Min nTPM: 1.8
Std nTPM: 3.7
Median nTPM: 8.6
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 20.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 20.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 19.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 18.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 17.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 17.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 17.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 17.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 17.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 17.2
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 6.8
Samples: 246

Max nTPM: 19.7
Min nTPM: 2.1
Std nTPM: 3.2
Median nTPM: 6.0
GTEX-ZVT3-0011-R6a-SM-51MSU 60-69 years, female 19.7
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 17.6
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 16.8
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 16.6
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 16.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 15.6
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 15.5
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 15.3
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 15.1
GTEX-1C64N-0011-R6a-SM-7IGO9 50-59 years, male 14.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 14.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 9.9
Samples: 205

Max nTPM: 19.6
Min nTPM: 3.7
Std nTPM: 3.6
Median nTPM: 9.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 19.6
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 19.5
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 19.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 19.1
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 19.0
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 18.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 17.6
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 17.1
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 16.8
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 16.7
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 16.7
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.0
FF:10164-103B2 76 years, female 16.0
Globus pallidus
Scaled Tags Per Million: 18.3
FF:10161-103A8 76 years, female 18.6
FF:10175-103C4 60 years, female 18.1
Nucleus accumbens
Scaled Tags Per Million: 19.8
FF:10037-101F1 23-56 years, mixed 19.8
Putamen
Scaled Tags Per Million: 14.9
FF:10176-103C5 60 years, female 14.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.1
Pig sample Sample description nTPM
Caudate
nTPM: 4.1
Samples: 4

Max nTPM: 4.9
Min nTPM: 3.0
Sample A Female 3.9
Sample B Female 3.0
Sample C Male 4.9
Sample D Male 4.4
Putamen
nTPM: 4.3
Samples: 4

Max nTPM: 5.3
Min nTPM: 2.9
Sample A Female 5.3
Sample B Female 2.9
Sample C Male 4.8
Sample D Male 4.0
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 6.4
Min nTPM: 3.5
Sample A Female 4.6
Sample B Female 3.5
Sample C Male 5.9
Sample D Male 6.4
Ventral pallidum
nTPM: 3.5
Samples: 4

Max nTPM: 4.6
Min nTPM: 3.0
Sample A Female 3.0
Sample B Female 3.1
Sample C Male 4.6
Sample D Male 3.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 5.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.1
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.1
Sample A Male 4.8
Sample B Male 5.7
Sample C Female 4.1
Sample D Female 5.6
Septum
nTPM: 5.3
Samples: 4

Max nTPM: 5.9
Min nTPM: 4.2
Sample A Male 4.2
Sample B Male 5.2
Sample C Female 5.9
Sample D Female 5.7
Ventral forebrain
nTPM: 4.8
Samples: 4

Max nTPM: 6.1
Min nTPM: 4.0
Sample A Male 4.8
Sample B Male 4.0
Sample C Female 6.1
Sample D Female 4.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
69289087 Antisense, RP_050407_02_D07, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
69289087 Antisense, RP_050407_02_D07, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.