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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:52.3 nTPM
HPA:52.3 nTPM
GTEx:58.0 nTPM
FANTOM5:92.8 Scaled Tags Per Million
Pig:34.7 nTPM
Mouse:6.7 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 52.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.4
2411 Female, age 72, unknown 51.8
1870 Female, age 42, unknown 51.2
1830 Male, age 51, unknown 51.0
2019 Male, age 18, unknown 50.7
1833 Male, age 53, unknown 49.8
2828 Female, age 72, unknown 45.2
2666 Male, age 74, left hemisphere 45.1
2586 Male, age 75, left hemisphere 43.9
2219 Male, age 76, both hemispheres 43.2
1827 Male, age 72, unknown 42.1
Dorsal raphe nucleus
nTPM: 47.9
2016 Female, age 72, unknown 52.1
2750 Male, age 76, both hemispheres 50.5
2298 Female, age 72, unknown 48.4
1828 Male, age 53, unknown 46.1
2047 Male, age 72, unknown 42.2
Inferior colliculus
nTPM: 42.6
1890 Male, age 53, unknown 45.9
2849 Male, age 72, unknown 43.8
1848 Female, age 42, unknown 41.6
2097 Female, age 72, unknown 39.3
Median raphe nucleus
nTPM: 43.3
2220 Male, age 76, midline 43.3
Pedunculopontine tegmental nucleus
nTPM: 44.2
2334 Male, age 80, both hemispheres 44.8
2338 Male, age 61, both hemispheres 44.5
1921 Female, age 85, both hemispheres 43.3
Periaquaductal grey, anterior
nTPM: 45.0
2502 Female, age 75, unknown 48.7
1795 Male, age 51, unknown 44.2
1947 Male, age 18, unknown 42.0
Periaquaductal grey, dorsal
nTPM: 46.2
2850 Male, age 76, both hemispheres 51.8
2464 Female, age 72, unknown 47.6
1840 Male, age 53, unknown 45.4
1831 Male, age 72, unknown 39.8
Periaquaductal grey, lateral
nTPM: 47.5
2272 Male, age 74, both hemispheres 49.9
2140 Male, age 76, both hemispheres 48.6
2053 Male, age 18, unknown 44.1
Pretectal area
nTPM: 41.4
2825 Male, age 18, unknown 46.4
2273 Male, age 74, both hemispheres 46.1
1815 Male, age 53, unknown 42.9
2224 Female, age 72, unknown 42.4
2407 Male, age 75, both hemispheres 41.8
2316 Male, age 76, right hemisphere 41.3
2667 Female, age 75, unknown 41.3
2007 Male, age 72, unknown 40.4
1817 Female, age 42, unknown 38.9
1944 Female, age 72, unknown 37.2
1816 Male, age 51, unknown 36.9
Red nucleus
nTPM: 52.3
2227 Male, age 72, unknown 58.6
2769 Male, age 72, unknown 58.6
1904 Male, age 53, unknown 56.4
1865 Male, age 51, unknown 55.1
2588 Male, age 74, left hemisphere 52.4
1821 Female, age 72, unknown 52.1
1954 Female, age 42, unknown 50.4
2503 Female, age 72, unknown 50.4
2785 Male, age 18, unknown 49.8
2823 Male, age 76, right hemisphere 49.5
2725 Female, age 75, unknown 47.1
2584 Male, age 75, left hemisphere 46.7
Substantia nigra
nTPM: 46.0
2665 Male, age 74, both hemispheres 51.9
2699 Male, age 18, unknown 48.4
2590 Female, age 75, unknown 48.2
1851 Male, age 51, unknown 48.0
2241 Male, age 72, unknown 46.3
2409 Female, age 72, unknown 45.3
2583 Male, age 75, right hemisphere 45.3
1916 Female, age 42, unknown 42.7
1941 Male, age 53, unknown 42.7
1889 Female, age 72, unknown 41.5
Superior colliculus
nTPM: 44.6
1995 Male, age 72, unknown 52.9
1913 Female, age 42, unknown 51.6
2587 Male, age 74, left hemisphere 48.9
1839 Male, age 51, unknown 43.8
2664 Male, age 75, both hemispheres 42.9
2668 Female, age 75, unknown 42.4
2261 Male, age 18, unknown 41.4
1796 Male, age 53, unknown 41.2
1895 Male, age 76, right hemisphere 40.7
2087 Female, age 72, unknown 40.0
Ventral tegmental area
nTPM: 47.6
2223 Female, age 72, unknown 57.6
2410 Female, age 72, unknown 49.9
1942 Male, age 51, unknown 46.7
2021 Male, age 53, unknown 44.2
2218 Male, age 76, both hemispheres 43.9
1915 Female, age 42, unknown 43.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.0
Samples: 139

Max nTPM: 136.6
Min nTPM: 18.9
Std nTPM: 21.9
Median nTPM: 55.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 136.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 132.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 115.3
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 110.5
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 107.6
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 105.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 95.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 95.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 94.2
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 93.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 91.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 92.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 92.8
FF:10158-103A5 76 years, female 92.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 34.7
Pig sample Sample description nTPM
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 31.0
Min nTPM: 19.5
Sample A Female 31.0
Sample B Female 20.5
Sample C Male 22.1
Sample D Male 19.5
Periaqueductal gray
nTPM: 15.8
Samples: 3

Max nTPM: 16.6
Min nTPM: 14.8
Sample B Female 16.6
Sample C Male 14.8
Sample D Male 16.1
Substantia nigra
nTPM: 26.1
Samples: 4

Max nTPM: 36.3
Min nTPM: 18.3
Sample A Female 18.3
Sample B Female 36.3
Sample C Male 19.5
Sample D Male 30.1
Superior colliculi
nTPM: 34.8
Samples: 4

Max nTPM: 59.5
Min nTPM: 25.6
Sample A Female 27.9
Sample B Female 59.5
Sample C Male 25.6
Sample D Male 26.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.7
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.2
Sample A Male 6.2
Sample B Male 7.1
Sample C Female 6.7
Sample D Female 6.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.