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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		67.732
RNA expressioni
Consensus:30.7 nTPM
HPA:30.7 nTPM
GTEx:32.3 nTPM
FANTOM5:53.3 Scaled Tags Per Million
Pig:57.1 nTPM
Mouse:163.2 nTPM
Allen mouse:13.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA039435Antibody HPA039536Antibody HPA061528
Glial cells LowLowLow
Neuronal cells MediumMediumMedium







HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA039536
Hippocampal formation mean intensity 67.732
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 41.920
Molecular layer of the dentate gyrus 43.644
Granular dentate gyrus 39.094
CA1 - oriens layer 47.025
CA1 - pyramidal layer 67.732
CA1 - radiatum layer 49.506
CA2 - oriens layer 49.945
CA2 - pyramidal layer 61.476
CA2 - radiatum layer 55.217
CA3 - oriens layer 50.728
CA3 - pyramidal layer 65.652
CA3 - radiatum layer 60.651
Stratum lucidum 31.331
Lacunosum moleculare 54.421
Subiculum 29.165

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 30.7
Sample id Sample description nTPM
Hippocampus
nTPM: 25.9
1898 Male, age 80, left hemisphere 31.2
2529 Female, age 94, left hemisphere 27.3
2621 Female, age 67, right hemisphere 25.5
1911 Female, age 85, right hemisphere 24.9
1855 Male, age 76, left hemisphere 24.4
2148 Female, age 91, left hemisphere 21.9
Dentate gyrus
nTPM: 26.4
1927 Female, age 91, both hemispheres 29.3
2528 Male, age 74, both hemispheres 27.9
2010 Male, age 76, both hemispheres 26.9
2246 Female, age 85, both hemispheres 24.8
2530 Female, age 94, left hemisphere 24.8
2531 Female, age 67, both hemispheres 24.7
Entorhinal gyrus
nTPM: 25.4
1938 Female, age 85, left hemisphere 27.9
2764 Male, age 80, right hemisphere 27.7
1787 Male, age 76, left hemisphere 25.9
2613 Female, age 94, left hemisphere 23.7
2686 Male, age 75, right hemisphere 23.5
2117 Female, age 91, right hemisphere 23.3
Hippocampus, CA1
nTPM: 28.7
2749 Male, age 80, left hemisphere 37.6
1873 Female, age 85, both hemispheres 28.7
2527 Male, age 74, both hemispheres 28.7
2045 Male, age 76, both hemispheres 25.9
2082 Female, age 91, right hemisphere 22.8
Hippocampus, CA2
nTPM: 27.4
1892 Male, age 76, both hemispheres 33.7
2249 Male, age 74, both hemispheres 29.9
1963 Male, age 80, left hemisphere 29.4
2113 Female, age 91, right hemisphere 24.5
2437 Female, age 94, left hemisphere 24.4
1940 Female, age 85, left hemisphere 22.6
Hippocampus, CA3
nTPM: 27.7
2137 Male, age 80, left hemisphere 34.4
2436 Male, age 74, both hemispheres 31.1
1867 Male, age 76, both hemispheres 29.6
1891 Female, age 85, both hemispheres 27.8
2620 Female, age 94, left hemisphere 24.7
2861 Female, age 67, both hemispheres 18.8
Parahippocampal cortex
nTPM: 27.4
1850 Male, age 80, both hemispheres 33.3
1990 Female, age 91, right hemisphere 29.6
1933 Female, age 85, both hemispheres 29.5
2250 Female, age 67, right hemisphere 29.0
2532 Female, age 72, left hemisphere 27.2
2692 Male, age 74, both hemispheres 27.0
2693 Female, age 94, both hemispheres 26.7
2245 Female, age 91, both hemispheres 25.7
2018 Male, age 76, both hemispheres 24.9
2622 Female, age 67, right hemisphere 21.2
Perirhinal gyrus
nTPM: 30.7
1794 Male, age 80, right hemisphere 31.9
1847 Female, age 91, left hemisphere 31.8
1841 Female, age 85, right hemisphere 31.4
2521 Female, age 94, right hemisphere 30.1
2848 Male, age 76, right hemisphere 28.1
Subiculum
nTPM: 25.7
1901 Male, age 80, both hemispheres 29.3
1977 Female, age 85, both hemispheres 27.3
2438 Female, age 94, left hemisphere 25.7
2729 Female, age 91, right hemisphere 24.9
2042 Male, age 76, both hemispheres 24.0
2619 Male, age 74, both hemispheres 23.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 32.3
Samples: 197

Max nTPM: 77.2
Min nTPM: 13.7
Std nTPM: 10.9
Median nTPM: 29.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 77.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 64.5
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 63.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 60.3
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 60.3
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 59.9
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 59.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 55.1
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 55.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 54.7
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 54.6
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.3
FF:10169-103B7 60 years, female 56.5
FF:10153-102I9 76 years, female 50.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 57.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 57.1
Samples: 4

Max nTPM: 69.9
Min nTPM: 41.1
Sample A Female 69.9
Sample B Female 57.7
Sample C Male 59.8
Sample D Male 41.1
Entorhinal cortex
nTPM: 55.3
Samples: 4

Max nTPM: 70.1
Min nTPM: 44.2
Sample A Female 55.3
Sample B Female 70.1
Sample C Male 51.4
Sample D Male 44.2
Subiculum
nTPM: 50.8
Samples: 4

Max nTPM: 65.3
Min nTPM: 43.2
Sample A Female 65.3
Sample B Female 43.2
Sample C Male 48.0
Sample D Male 46.8
Ventral hippocampus
nTPM: 54.3
Samples: 4

Max nTPM: 74.3
Min nTPM: 41.2
Sample A Female 74.3
Sample B Female 41.2
Sample C Male 50.4
Sample D Male 51.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 163.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 150.3
Samples: 4

Max nTPM: 158.2
Min nTPM: 146.1
Sample A Male 146.9
Sample B Male 158.2
Sample C Female 150.0
Sample D Female 146.1
Hippocampal formation
nTPM: 163.2
Samples: 4

Max nTPM: 175.2
Min nTPM: 154.0
Sample A Male 175.2
Sample B Male 162.8
Sample C Female 160.6
Sample D Female 154.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 13.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.1
69887439 Antisense, RP_050512_03_F11, Mouse strain C57BL/6J (56 days, male) 13.1

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The Human Protein Atlas

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