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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.0 nTPM
HPA:42.0 nTPM
GTEx:47.0 nTPM
FANTOM5:181.6 Scaled Tags Per Million
Pig:72.5 nTPM
Mouse:0.2 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.7
1870 Female, age 42, unknown 45.6
1833 Male, age 53, unknown 40.0
1830 Male, age 51, unknown 38.5
2828 Female, age 72, unknown 37.8
2666 Male, age 74, left hemisphere 37.2
2019 Male, age 18, unknown 36.5
2411 Female, age 72, unknown 34.9
1827 Male, age 72, unknown 34.0
2219 Male, age 76, both hemispheres 31.9
2586 Male, age 75, left hemisphere 30.8
Dorsal raphe nucleus
nTPM: 38.2
2016 Female, age 72, unknown 40.2
2750 Male, age 76, both hemispheres 39.8
1828 Male, age 53, unknown 38.7
2047 Male, age 72, unknown 36.8
2298 Female, age 72, unknown 35.3
Inferior colliculus
nTPM: 36.6
1848 Female, age 42, unknown 38.5
2849 Male, age 72, unknown 37.5
1890 Male, age 53, unknown 35.6
2097 Female, age 72, unknown 34.8
Median raphe nucleus
nTPM: 39.7
2220 Male, age 76, midline 39.7
Pedunculopontine tegmental nucleus
nTPM: 39.8
2338 Male, age 61, both hemispheres 43.2
2334 Male, age 80, both hemispheres 41.6
1921 Female, age 85, both hemispheres 34.4
Periaquaductal grey, anterior
nTPM: 33.0
2502 Female, age 75, unknown 35.9
1795 Male, age 51, unknown 32.6
1947 Male, age 18, unknown 30.6
Periaquaductal grey, dorsal
nTPM: 41.0
2850 Male, age 76, both hemispheres 51.3
1840 Male, age 53, unknown 38.1
2464 Female, age 72, unknown 37.4
1831 Male, age 72, unknown 37.2
Periaquaductal grey, lateral
nTPM: 41.9
2140 Male, age 76, both hemispheres 49.3
2053 Male, age 18, unknown 41.0
2272 Male, age 74, both hemispheres 35.3
Pretectal area
nTPM: 35.4
2316 Male, age 76, right hemisphere 40.9
2667 Female, age 75, unknown 40.3
2224 Female, age 72, unknown 38.2
2825 Male, age 18, unknown 36.6
2273 Male, age 74, both hemispheres 36.3
1817 Female, age 42, unknown 36.0
1815 Male, age 53, unknown 35.4
2407 Male, age 75, both hemispheres 34.1
1816 Male, age 51, unknown 32.3
1944 Female, age 72, unknown 30.8
2007 Male, age 72, unknown 28.6
Red nucleus
nTPM: 42.0
1904 Male, age 53, unknown 48.5
1865 Male, age 51, unknown 46.4
2227 Male, age 72, unknown 45.7
2503 Female, age 72, unknown 45.5
1821 Female, age 72, unknown 45.0
1954 Female, age 42, unknown 44.8
2769 Male, age 72, unknown 42.7
2823 Male, age 76, right hemisphere 42.1
2785 Male, age 18, unknown 39.2
2725 Female, age 75, unknown 37.2
2588 Male, age 74, left hemisphere 36.4
2584 Male, age 75, left hemisphere 30.3
Substantia nigra
nTPM: 38.0
2699 Male, age 18, unknown 47.5
2409 Female, age 72, unknown 40.4
2241 Male, age 72, unknown 40.3
2665 Male, age 74, both hemispheres 40.2
1851 Male, age 51, unknown 37.4
1889 Female, age 72, unknown 37.0
2590 Female, age 75, unknown 37.0
1916 Female, age 42, unknown 35.3
1941 Male, age 53, unknown 33.6
2583 Male, age 75, right hemisphere 31.0
Superior colliculus
nTPM: 37.5
1995 Male, age 72, unknown 45.6
1913 Female, age 42, unknown 45.3
2587 Male, age 74, left hemisphere 40.1
1895 Male, age 76, right hemisphere 38.4
1839 Male, age 51, unknown 37.0
2087 Female, age 72, unknown 36.0
1796 Male, age 53, unknown 35.1
2668 Female, age 75, unknown 33.7
2261 Male, age 18, unknown 32.8
2664 Male, age 75, both hemispheres 31.1
Ventral tegmental area
nTPM: 38.8
2223 Female, age 72, unknown 44.1
2021 Male, age 53, unknown 38.7
2410 Female, age 72, unknown 38.7
2218 Male, age 76, both hemispheres 37.4
1915 Female, age 42, unknown 37.2
1942 Male, age 51, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 47.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 47.0
Samples: 139

Max nTPM: 106.6
Min nTPM: 19.6
Std nTPM: 14.7
Median nTPM: 43.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 106.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 81.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 77.6
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 77.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 77.5
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 77.0
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 75.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 75.5
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 74.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 74.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 181.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 181.6
FF:10158-103A5 76 years, female 181.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 72.5
Pig sample Sample description nTPM
Midbrain
nTPM: 70.9
Samples: 4

Max nTPM: 119.6
Min nTPM: 43.9
Sample A Female 119.6
Sample B Female 62.4
Sample C Male 57.8
Sample D Male 43.9
Periaqueductal gray
nTPM: 62.9
Samples: 3

Max nTPM: 65.7
Min nTPM: 60.3
Sample B Female 60.3
Sample C Male 62.8
Sample D Male 65.7
Substantia nigra
nTPM: 72.5
Samples: 4

Max nTPM: 81.9
Min nTPM: 68.4
Sample A Female 68.4
Sample B Female 68.4
Sample C Male 71.3
Sample D Male 81.9
Superior colliculi
nTPM: 66.3
Samples: 4

Max nTPM: 76.0
Min nTPM: 58.9
Sample A Female 58.9
Sample B Female 76.0
Sample C Male 65.1
Sample D Male 65.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.3
Sample C Female 0.0
Sample D Female 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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