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NMT1
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.7 nTPM
HPA:33.7 nTPM
GTEx:26.4 nTPM
FANTOM5:211.6 Scaled Tags Per Million
Pig:63.5 nTPM
Mouse:50.8 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.3
2586 Male, age 75, left hemisphere 36.8
1827 Male, age 72, unknown 34.3
2828 Female, age 72, unknown 32.9
2411 Female, age 72, unknown 31.9
2019 Male, age 18, unknown 31.6
1870 Female, age 42, unknown 29.9
1830 Male, age 51, unknown 29.7
2666 Male, age 74, left hemisphere 29.5
1833 Male, age 53, unknown 29.1
2219 Male, age 76, both hemispheres 27.2
Dorsal raphe nucleus
nTPM: 31.8
2298 Female, age 72, unknown 33.9
2047 Male, age 72, unknown 32.3
1828 Male, age 53, unknown 31.9
2016 Female, age 72, unknown 31.4
2750 Male, age 76, both hemispheres 29.3
Inferior colliculus
nTPM: 32.3
2097 Female, age 72, unknown 33.8
1848 Female, age 42, unknown 33.1
1890 Male, age 53, unknown 31.4
2849 Male, age 72, unknown 31.0
Median raphe nucleus
nTPM: 29.2
2220 Male, age 76, midline 29.2
Pedunculopontine tegmental nucleus
nTPM: 31.1
1921 Female, age 85, both hemispheres 31.8
2334 Male, age 80, both hemispheres 31.8
2338 Male, age 61, both hemispheres 29.6
Periaquaductal grey, anterior
nTPM: 32.9
1947 Male, age 18, unknown 34.3
1795 Male, age 51, unknown 32.2
2502 Female, age 75, unknown 32.2
Periaquaductal grey, dorsal
nTPM: 31.7
1840 Male, age 53, unknown 36.8
2464 Female, age 72, unknown 30.7
2850 Male, age 76, both hemispheres 29.8
1831 Male, age 72, unknown 29.5
Periaquaductal grey, lateral
nTPM: 31.2
2272 Male, age 74, both hemispheres 31.9
2053 Male, age 18, unknown 31.8
2140 Male, age 76, both hemispheres 29.9
Pretectal area
nTPM: 32.8
1944 Female, age 72, unknown 35.9
1816 Male, age 51, unknown 35.0
1817 Female, age 42, unknown 33.6
2007 Male, age 72, unknown 33.6
2667 Female, age 75, unknown 33.5
2273 Male, age 74, both hemispheres 33.4
1815 Male, age 53, unknown 32.9
2407 Male, age 75, both hemispheres 32.2
2825 Male, age 18, unknown 31.6
2224 Female, age 72, unknown 30.0
2316 Male, age 76, right hemisphere 28.8
Red nucleus
nTPM: 30.1
2725 Female, age 75, unknown 32.8
1821 Female, age 72, unknown 32.5
1954 Female, age 42, unknown 31.4
2588 Male, age 74, left hemisphere 31.0
2584 Male, age 75, left hemisphere 30.4
2503 Female, age 72, unknown 30.1
2785 Male, age 18, unknown 29.9
2227 Male, age 72, unknown 29.4
2769 Male, age 72, unknown 29.4
1865 Male, age 51, unknown 29.2
1904 Male, age 53, unknown 28.7
2823 Male, age 76, right hemisphere 26.8
Substantia nigra
nTPM: 33.7
1916 Female, age 42, unknown 38.4
2241 Male, age 72, unknown 36.4
1851 Male, age 51, unknown 36.1
1889 Female, age 72, unknown 34.1
2583 Male, age 75, right hemisphere 33.6
2665 Male, age 74, both hemispheres 33.2
1941 Male, age 53, unknown 32.8
2590 Female, age 75, unknown 31.8
2409 Female, age 72, unknown 30.7
2699 Male, age 18, unknown 30.3
Superior colliculus
nTPM: 32.6
2664 Male, age 75, both hemispheres 38.7
1796 Male, age 53, unknown 34.9
2261 Male, age 18, unknown 34.8
2087 Female, age 72, unknown 34.7
1895 Male, age 76, right hemisphere 31.2
2668 Female, age 75, unknown 31.2
1839 Male, age 51, unknown 31.0
1995 Male, age 72, unknown 30.5
2587 Male, age 74, left hemisphere 29.9
1913 Female, age 42, unknown 29.5
Ventral tegmental area
nTPM: 32.2
2410 Female, age 72, unknown 35.3
1915 Female, age 42, unknown 33.3
1942 Male, age 51, unknown 32.4
2223 Female, age 72, unknown 31.7
2218 Male, age 76, both hemispheres 30.5
2021 Male, age 53, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 26.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.4
Samples: 139

Max nTPM: 46.2
Min nTPM: 16.1
Std nTPM: 5.0
Median nTPM: 26.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 46.2
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 42.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 38.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 37.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 37.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 35.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 35.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 35.2
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 35.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 211.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 211.6
FF:10158-103A5 76 years, female 211.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 63.5
Pig sample Sample description nTPM
Midbrain
nTPM: 63.5
Samples: 4

Max nTPM: 90.0
Min nTPM: 48.6
Sample A Female 90.0
Sample B Female 56.7
Sample C Male 58.7
Sample D Male 48.6
Periaqueductal gray
nTPM: 56.0
Samples: 3

Max nTPM: 64.7
Min nTPM: 48.0
Sample B Female 55.2
Sample C Male 64.7
Sample D Male 48.0
Substantia nigra
nTPM: 58.7
Samples: 4

Max nTPM: 69.2
Min nTPM: 50.9
Sample A Female 69.2
Sample B Female 52.0
Sample C Male 62.6
Sample D Male 50.9
Superior colliculi
nTPM: 51.7
Samples: 4

Max nTPM: 57.0
Min nTPM: 40.0
Sample A Female 56.2
Sample B Female 40.0
Sample C Male 57.0
Sample D Male 53.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 50.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 50.8
Samples: 4

Max nTPM: 53.2
Min nTPM: 45.8
Sample A Male 45.8
Sample B Male 51.4
Sample C Female 53.2
Sample D Female 52.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
76097709 Antisense, RP_060626_01_C05, Mouse strain C57BL/6J (56 days, male) 2.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.