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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.2 nTPM
HPA:17.2 nTPM
GTEx:32.3 nTPM
FANTOM5:93.2 Scaled Tags Per Million
Pig:50.6 nTPM
Mouse:63.9 nTPM
Allen mouse:0.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 17.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2586 Male, age 75, left hemisphere 21.0
1870 Female, age 42, unknown 16.5
2411 Female, age 72, unknown 16.4
1833 Male, age 53, unknown 15.9
1827 Male, age 72, unknown 15.6
1830 Male, age 51, unknown 15.1
2666 Male, age 74, left hemisphere 15.1
2828 Female, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 14.3
2019 Male, age 18, unknown 13.5
Dorsal raphe nucleus
nTPM: 15.2
2047 Male, age 72, unknown 16.0
2298 Female, age 72, unknown 16.0
1828 Male, age 53, unknown 15.6
2750 Male, age 76, both hemispheres 14.3
2016 Female, age 72, unknown 14.2
Inferior colliculus
nTPM: 16.3
1848 Female, age 42, unknown 17.9
2849 Male, age 72, unknown 17.2
2097 Female, age 72, unknown 15.7
1890 Male, age 53, unknown 14.4
Median raphe nucleus
nTPM: 16.1
2220 Male, age 76, midline 16.1
Pedunculopontine tegmental nucleus
nTPM: 17.2
1921 Female, age 85, both hemispheres 20.7
2334 Male, age 80, both hemispheres 16.3
2338 Male, age 61, both hemispheres 14.8
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 17.2
1795 Male, age 51, unknown 15.2
2502 Female, age 75, unknown 15.2
Periaquaductal grey, dorsal
nTPM: 16.6
2850 Male, age 76, both hemispheres 20.8
1831 Male, age 72, unknown 17.2
1840 Male, age 53, unknown 15.1
2464 Female, age 72, unknown 13.5
Periaquaductal grey, lateral
nTPM: 15.7
2140 Male, age 76, both hemispheres 16.2
2053 Male, age 18, unknown 15.5
2272 Male, age 74, both hemispheres 15.5
Pretectal area
nTPM: 17.1
2316 Male, age 76, right hemisphere 19.0
1944 Female, age 72, unknown 18.9
2667 Female, age 75, unknown 18.7
2224 Female, age 72, unknown 18.0
1816 Male, age 51, unknown 17.7
1817 Female, age 42, unknown 17.3
2007 Male, age 72, unknown 17.1
1815 Male, age 53, unknown 16.5
2825 Male, age 18, unknown 15.7
2407 Male, age 75, both hemispheres 15.3
2273 Male, age 74, both hemispheres 14.0
Red nucleus
nTPM: 17.2
2503 Female, age 72, unknown 20.5
1904 Male, age 53, unknown 20.4
1821 Female, age 72, unknown 19.6
2725 Female, age 75, unknown 18.7
2769 Male, age 72, unknown 18.3
2785 Male, age 18, unknown 18.0
1954 Female, age 42, unknown 16.8
1865 Male, age 51, unknown 15.8
2227 Male, age 72, unknown 15.5
2588 Male, age 74, left hemisphere 14.9
2584 Male, age 75, left hemisphere 14.5
2823 Male, age 76, right hemisphere 13.8
Substantia nigra
nTPM: 15.8
1889 Female, age 72, unknown 18.3
1851 Male, age 51, unknown 17.7
2699 Male, age 18, unknown 17.7
1916 Female, age 42, unknown 16.3
2665 Male, age 74, both hemispheres 15.8
1941 Male, age 53, unknown 15.7
2583 Male, age 75, right hemisphere 15.0
2241 Male, age 72, unknown 14.9
2590 Female, age 75, unknown 14.2
2409 Female, age 72, unknown 12.2
Superior colliculus
nTPM: 16.0
1913 Female, age 42, unknown 18.1
1895 Male, age 76, right hemisphere 17.8
1796 Male, age 53, unknown 16.8
1839 Male, age 51, unknown 16.1
2587 Male, age 74, left hemisphere 15.9
2261 Male, age 18, unknown 15.8
2668 Female, age 75, unknown 15.4
2087 Female, age 72, unknown 15.1
2664 Male, age 75, both hemispheres 14.7
1995 Male, age 72, unknown 14.3
Ventral tegmental area
nTPM: 16.9
2218 Male, age 76, both hemispheres 18.6
2223 Female, age 72, unknown 17.7
2410 Female, age 72, unknown 17.3
1942 Male, age 51, unknown 16.3
2021 Male, age 53, unknown 16.0
1915 Female, age 42, unknown 15.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.3
Samples: 139

Max nTPM: 67.1
Min nTPM: 11.0
Std nTPM: 8.7
Median nTPM: 31.5
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 67.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 60.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 56.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 56.8
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 56.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 52.8
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 48.8
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 48.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 46.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 45.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 45.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 93.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.2
FF:10158-103A5 76 years, female 93.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 50.6
Pig sample Sample description nTPM
Midbrain
nTPM: 50.6
Samples: 4

Max nTPM: 56.2
Min nTPM: 46.0
Sample A Female 56.2
Sample B Female 52.4
Sample C Male 47.9
Sample D Male 46.0
Periaqueductal gray
nTPM: 46.5
Samples: 3

Max nTPM: 49.3
Min nTPM: 43.9
Sample B Female 46.2
Sample C Male 49.3
Sample D Male 43.9
Substantia nigra
nTPM: 45.8
Samples: 4

Max nTPM: 51.4
Min nTPM: 41.0
Sample A Female 51.4
Sample B Female 46.6
Sample C Male 44.0
Sample D Male 41.0
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 52.6
Min nTPM: 45.1
Sample A Female 52.6
Sample B Female 45.1
Sample C Male 48.6
Sample D Male 47.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.9
Samples: 4

Max nTPM: 67.0
Min nTPM: 60.5
Sample A Male 62.9
Sample B Male 67.0
Sample C Female 60.5
Sample D Female 65.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.9
75860985 Antisense, RP_060601_03_A02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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