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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.3 nTPM
HPA:34.3 nTPM
GTEx:35.5 nTPM
FANTOM5:16.5 Scaled Tags Per Million
Pig:17.2 nTPM
Mouse:12.3 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 34.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.8
2586 Male, age 75, left hemisphere 37.1
2828 Female, age 72, unknown 34.5
2411 Female, age 72, unknown 28.7
2666 Male, age 74, left hemisphere 28.3
1827 Male, age 72, unknown 27.4
1870 Female, age 42, unknown 26.7
1833 Male, age 53, unknown 25.3
1830 Male, age 51, unknown 24.5
2219 Male, age 76, both hemispheres 24.1
2019 Male, age 18, unknown 21.1
Dorsal raphe nucleus
nTPM: 34.3
2047 Male, age 72, unknown 40.9
2016 Female, age 72, unknown 36.5
2298 Female, age 72, unknown 35.5
1828 Male, age 53, unknown 29.7
2750 Male, age 76, both hemispheres 29.1
Inferior colliculus
nTPM: 28.1
2849 Male, age 72, unknown 30.9
1848 Female, age 42, unknown 29.0
1890 Male, age 53, unknown 28.3
2097 Female, age 72, unknown 24.3
Median raphe nucleus
nTPM: 29.4
2220 Male, age 76, midline 29.4
Pedunculopontine tegmental nucleus
nTPM: 27.8
2334 Male, age 80, both hemispheres 30.3
1921 Female, age 85, both hemispheres 27.1
2338 Male, age 61, both hemispheres 25.9
Periaquaductal grey, anterior
nTPM: 33.2
1795 Male, age 51, unknown 36.0
2502 Female, age 75, unknown 35.2
1947 Male, age 18, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 33.6
1840 Male, age 53, unknown 36.8
2850 Male, age 76, both hemispheres 33.7
2464 Female, age 72, unknown 33.2
1831 Male, age 72, unknown 30.7
Periaquaductal grey, lateral
nTPM: 33.9
2053 Male, age 18, unknown 37.5
2140 Male, age 76, both hemispheres 36.3
2272 Male, age 74, both hemispheres 27.8
Pretectal area
nTPM: 25.2
2825 Male, age 18, unknown 31.9
2224 Female, age 72, unknown 29.2
2667 Female, age 75, unknown 27.6
2407 Male, age 75, both hemispheres 26.4
2273 Male, age 74, both hemispheres 26.3
2316 Male, age 76, right hemisphere 25.9
1816 Male, age 51, unknown 23.2
1944 Female, age 72, unknown 22.4
1815 Male, age 53, unknown 22.3
1817 Female, age 42, unknown 22.2
2007 Male, age 72, unknown 20.1
Red nucleus
nTPM: 25.7
2584 Male, age 75, left hemisphere 30.7
2588 Male, age 74, left hemisphere 27.5
2227 Male, age 72, unknown 27.4
2769 Male, age 72, unknown 27.4
2823 Male, age 76, right hemisphere 26.1
1954 Female, age 42, unknown 26.0
1821 Female, age 72, unknown 25.9
1904 Male, age 53, unknown 25.0
2503 Female, age 72, unknown 23.5
2725 Female, age 75, unknown 23.4
1865 Male, age 51, unknown 23.3
2785 Male, age 18, unknown 21.9
Substantia nigra
nTPM: 28.5
2665 Male, age 74, both hemispheres 39.0
2699 Male, age 18, unknown 35.7
1916 Female, age 42, unknown 29.7
1851 Male, age 51, unknown 29.3
2583 Male, age 75, right hemisphere 28.8
1941 Male, age 53, unknown 28.3
2590 Female, age 75, unknown 27.2
2241 Male, age 72, unknown 24.0
1889 Female, age 72, unknown 21.7
2409 Female, age 72, unknown 21.1
Superior colliculus
nTPM: 26.6
2664 Male, age 75, both hemispheres 32.8
1995 Male, age 72, unknown 28.0
2587 Male, age 74, left hemisphere 27.6
1796 Male, age 53, unknown 27.1
1839 Male, age 51, unknown 26.7
2261 Male, age 18, unknown 26.4
2087 Female, age 72, unknown 25.3
1913 Female, age 42, unknown 25.1
2668 Female, age 75, unknown 25.1
1895 Male, age 76, right hemisphere 22.0
Ventral tegmental area
nTPM: 31.3
2021 Male, age 53, unknown 38.3
1942 Male, age 51, unknown 35.7
1915 Female, age 42, unknown 32.4
2223 Female, age 72, unknown 30.0
2218 Male, age 76, both hemispheres 27.8
2410 Female, age 72, unknown 23.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 35.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 35.5
Samples: 139

Max nTPM: 129.8
Min nTPM: 12.2
Std nTPM: 17.6
Median nTPM: 31.2
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 129.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 99.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 75.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 67.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 64.7
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 64.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 62.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 61.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 60.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 60.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 59.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 16.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 16.5
FF:10158-103A5 76 years, female 16.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 17.2
Pig sample Sample description nTPM
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 30.1
Min nTPM: 6.7
Sample A Female 30.1
Sample B Female 6.7
Sample C Male 9.2
Sample D Male 7.3
Periaqueductal gray
nTPM: 6.8
Samples: 3

Max nTPM: 8.6
Min nTPM: 5.7
Sample B Female 6.0
Sample C Male 8.6
Sample D Male 5.7
Substantia nigra
nTPM: 13.7
Samples: 4

Max nTPM: 19.0
Min nTPM: 10.6
Sample A Female 13.4
Sample B Female 19.0
Sample C Male 10.6
Sample D Male 11.6
Superior colliculi
nTPM: 17.2
Samples: 4

Max nTPM: 32.1
Min nTPM: 10.1
Sample A Female 15.9
Sample B Female 32.1
Sample C Male 10.7
Sample D Male 10.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.3
Samples: 4

Max nTPM: 13.9
Min nTPM: 11.3
Sample A Male 13.9
Sample B Male 12.3
Sample C Female 11.3
Sample D Female 11.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68499016 Antisense, RP_050113_02_G09, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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