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DAB2IP
BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:44.5 nTPM
HPA:44.5 nTPM
GTEx:45.4 nTPM
FANTOM5:40.8 Scaled Tags Per Million
Pig:45.7 nTPM
Mouse:33.3 nTPM
Allen mouse:3.6 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 44.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 33.5
2846 Female, age 79, unknown 46.4
2290 Female, age 72, unknown 39.4
2289 Male, age 61, right hemisphere 38.2
1781 Male, age 74, unknown 30.8
1857 Female, age 85, left hemisphere 29.8
1854 Male, age 80, left hemisphere 29.2
2288 Male, age 75, left hemisphere 27.3
2481 Female, age 94, left hemisphere 26.9
Claustrum
nTPM: 22.4
2284 Female, age 91, both hemispheres 31.5
2645 Female, age 72, unknown 29.7
2568 Male, age 61, both hemispheres 26.0
2198 Male, age 80, both hemispheres 22.0
2491 Male, age 75, both hemispheres 21.2
2196 Female, age 79, unknown 20.1
1956 Male, age 74, unknown 18.1
2392 Female, age 94, both hemispheres 17.1
2292 Female, age 85, both hemispheres 16.1
Globus pallidus, externus
nTPM: 19.6
2567 Female, age 72, unknown 27.4
2646 Male, age 61, right hemisphere 24.4
2772 Female, age 79, unknown 16.0
1996 Male, age 80, right hemisphere 15.6
2395 Male, age 75, both hemispheres 14.6
Globus pallidus, internus
nTPM: 15.6
2483 Female, age 94, right hemisphere 23.0
2566 Female, age 72, unknown 20.6
2287 Male, age 75, right hemisphere 14.9
2037 Male, age 80, right hemisphere 14.7
1818 Male, age 74, unknown 14.6
2111 Female, age 85, right hemisphere 11.8
2778 Female, age 91, both hemispheres 9.9
Nucleus accumbens
nTPM: 23.6
2824 Male, age 61, right hemisphere 31.0
1783 Male, age 74, unknown 30.2
1806 Female, age 85, left hemisphere 24.7
1856 Female, age 91, right hemisphere 24.7
2286 Male, age 75, left hemisphere 24.7
2698 Female, age 72, unknown 21.6
2391 Female, age 94, left hemisphere 16.9
2732 Male, age 80, right hemisphere 15.1
Nucleus basalis of Meynert
nTPM: 32.4
2484 Female, age 94, left hemisphere 40.0
2393 Male, age 80, right hemisphere 35.3
2569 Male, age 61, both hemispheres 29.7
2821 Male, age 75, both hemispheres 24.7
Nucleus of the diagonal band
nTPM: 24.0
2775 Male, age 80, right hemisphere 26.3
2195 Female, age 85, both hemispheres 25.6
2029 Male, age 61, right hemisphere 23.5
1979 Male, age 74, unknown 23.2
1812 Female, age 91, both hemispheres 21.4
Olfactory tubercle
nTPM: 25.4
1998 Female, age 91, both hemispheres 26.5
2856 Male, age 75, right hemisphere 25.4
1846 Male, age 80, right hemisphere 25.2
2487 Female, age 94, left hemisphere 24.6
Putamen
nTPM: 44.5
2489 Female, age 72, unknown 62.8
2466 Female, age 79, unknown 52.4
2647 Male, age 75, left hemisphere 50.6
1829 Male, age 74, unknown 45.1
1838 Male, age 80, right hemisphere 38.5
1937 Female, age 91, right hemisphere 31.8
2482 Female, age 94, left hemisphere 30.0
Septal nuclei
nTPM: 23.0
1960 Male, age 74, unknown 31.5
2059 Female, age 85, both hemispheres 25.4
2031 Female, age 72, unknown 23.0
2394 Male, age 61, left hemisphere 21.5
2009 Female, age 91, both hemispheres 20.6
2199 Male, age 80, right hemisphere 19.8
2629 Female, age 94, right hemisphere 18.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 45.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 39.9
Samples: 246

Max nTPM: 65.6
Min nTPM: 12.3
Std nTPM: 10.1
Median nTPM: 40.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 65.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 62.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 62.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 62.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 61.2
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 61.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 60.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 60.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 59.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 59.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 32.7
Samples: 246

Max nTPM: 81.4
Min nTPM: 9.5
Std nTPM: 9.0
Median nTPM: 32.3
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 81.4
GTEX-1F7RK-0011-R6b-SM-ARZMG 20-29 years, female 54.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 53.8
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 53.5
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 52.3
GTEX-WWYW-0011-R6A-SM-3NB3G 50-59 years, female 52.3
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 51.4
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 51.2
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 51.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 51.0
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 50.8
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Brain - Putamen (basal ganglia)
Average nTPM: 45.4
Samples: 205

Max nTPM: 99.5
Min nTPM: 19.8
Std nTPM: 11.5
Median nTPM: 45.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 99.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 76.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 69.1
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 68.7
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 68.6
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 66.4
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 66.2
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 66.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 65.7
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 65.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 65.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 40.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 30.1
FF:10164-103B2 76 years, female 30.1
Globus pallidus
Scaled Tags Per Million: 30.1
FF:10175-103C4 60 years, female 37.1
FF:10161-103A8 76 years, female 23.1
Nucleus accumbens
Scaled Tags Per Million: 40.8
FF:10037-101F1 23-56 years, mixed 40.8
Putamen
Scaled Tags Per Million: 33.7
FF:10176-103C5 60 years, female 33.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 45.7
Pig sample Sample description nTPM
Caudate
nTPM: 33.7
Samples: 4

Max nTPM: 44.1
Min nTPM: 21.0
Sample A Female 21.0
Sample B Female 32.3
Sample C Male 44.1
Sample D Male 37.4
Putamen
nTPM: 45.8
Samples: 4

Max nTPM: 62.2
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 46.3
Sample C Male 62.2
Sample D Male 53.3
Septum
nTPM: 18.9
Samples: 4

Max nTPM: 21.4
Min nTPM: 15.7
Sample A Female 18.7
Sample B Female 19.8
Sample C Male 21.4
Sample D Male 15.7
Ventral pallidum
nTPM: 23.0
Samples: 4

Max nTPM: 28.5
Min nTPM: 18.5
Sample A Female 18.5
Sample B Female 23.8
Sample C Male 28.5
Sample D Male 21.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 33.3
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 33.3
Samples: 4

Max nTPM: 39.7
Min nTPM: 28.3
Sample A Male 35.0
Sample B Male 39.7
Sample C Female 28.3
Sample D Female 30.0
Septum
nTPM: 21.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 19.8
Sample A Male 24.3
Sample B Male 19.8
Sample C Female 20.0
Sample D Female 21.8
Ventral forebrain
nTPM: 25.6
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.3
Sample A Male 28.4
Sample B Male 26.6
Sample C Female 23.3
Sample D Female 24.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 3.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
71496405 Antisense, RP_050913_04_E03, Mouse strain C57BL/6J (56 days, male) 3.6
Pallidum
Expression energy: 1.5
71496405 Antisense, RP_050913_04_E03, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.