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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:164.4 nTPM
HPA:164.4 nTPM
GTEx:139.5 nTPM
FANTOM5:636.0 Scaled Tags Per Million
Pig:242.1 nTPM
Mouse:329.9 nTPM
Allen mouse:12.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 164.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 126.6
2411 Female, age 72, unknown 180.1
1830 Male, age 51, unknown 160.6
1833 Male, age 53, unknown 154.3
1870 Female, age 42, unknown 151.5
2019 Male, age 18, unknown 150.3
2828 Female, age 72, unknown 117.7
2219 Male, age 76, both hemispheres 107.5
1827 Male, age 72, unknown 97.2
2666 Male, age 74, left hemisphere 87.3
2586 Male, age 75, left hemisphere 59.1
Dorsal raphe nucleus
nTPM: 106.9
2750 Male, age 76, both hemispheres 194.9
2016 Female, age 72, unknown 102.4
1828 Male, age 53, unknown 95.0
2298 Female, age 72, unknown 76.2
2047 Male, age 72, unknown 66.0
Inferior colliculus
nTPM: 91.0
1890 Male, age 53, unknown 94.5
1848 Female, age 42, unknown 94.3
2097 Female, age 72, unknown 88.9
2849 Male, age 72, unknown 86.3
Median raphe nucleus
nTPM: 100.8
2220 Male, age 76, midline 100.8
Pedunculopontine tegmental nucleus
nTPM: 129.7
2334 Male, age 80, both hemispheres 145.9
1921 Female, age 85, both hemispheres 121.8
2338 Male, age 61, both hemispheres 121.2
Periaquaductal grey, anterior
nTPM: 90.5
1947 Male, age 18, unknown 115.0
2502 Female, age 75, unknown 88.6
1795 Male, age 51, unknown 67.8
Periaquaductal grey, dorsal
nTPM: 73.8
2464 Female, age 72, unknown 106.4
1831 Male, age 72, unknown 72.6
2850 Male, age 76, both hemispheres 62.7
1840 Male, age 53, unknown 53.6
Periaquaductal grey, lateral
nTPM: 81.1
2272 Male, age 74, both hemispheres 106.4
2053 Male, age 18, unknown 77.3
2140 Male, age 76, both hemispheres 59.6
Pretectal area
nTPM: 89.6
2316 Male, age 76, right hemisphere 122.4
1815 Male, age 53, unknown 118.3
2273 Male, age 74, both hemispheres 100.5
1817 Female, age 42, unknown 98.9
2007 Male, age 72, unknown 94.9
2407 Male, age 75, both hemispheres 89.0
2825 Male, age 18, unknown 83.8
2224 Female, age 72, unknown 80.5
2667 Female, age 75, unknown 68.7
1944 Female, age 72, unknown 65.6
1816 Male, age 51, unknown 63.5
Red nucleus
nTPM: 164.4
1821 Female, age 72, unknown 214.7
1865 Male, age 51, unknown 211.2
1904 Male, age 53, unknown 198.8
2823 Male, age 76, right hemisphere 198.6
2227 Male, age 72, unknown 169.1
2769 Male, age 72, unknown 168.5
2503 Female, age 72, unknown 167.0
1954 Female, age 42, unknown 163.4
2785 Male, age 18, unknown 158.9
2725 Female, age 75, unknown 127.6
2588 Male, age 74, left hemisphere 111.8
2584 Male, age 75, left hemisphere 83.8
Substantia nigra
nTPM: 98.2
2409 Female, age 72, unknown 128.9
2590 Female, age 75, unknown 128.5
1851 Male, age 51, unknown 112.6
1889 Female, age 72, unknown 112.3
2241 Male, age 72, unknown 101.2
2583 Male, age 75, right hemisphere 94.5
1941 Male, age 53, unknown 85.5
2699 Male, age 18, unknown 81.0
1916 Female, age 42, unknown 76.4
2665 Male, age 74, both hemispheres 60.9
Superior colliculus
nTPM: 112.0
1913 Female, age 42, unknown 154.1
1895 Male, age 76, right hemisphere 149.9
1995 Male, age 72, unknown 149.8
2587 Male, age 74, left hemisphere 134.2
2668 Female, age 75, unknown 120.1
1839 Male, age 51, unknown 113.2
1796 Male, age 53, unknown 91.0
2261 Male, age 18, unknown 77.9
2087 Female, age 72, unknown 75.5
2664 Male, age 75, both hemispheres 54.4
Ventral tegmental area
nTPM: 115.6
2223 Female, age 72, unknown 159.8
2410 Female, age 72, unknown 149.5
2218 Male, age 76, both hemispheres 104.4
1942 Male, age 51, unknown 97.4
2021 Male, age 53, unknown 93.0
1915 Female, age 42, unknown 89.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 139.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 139.5
Samples: 139

Max nTPM: 553.5
Min nTPM: 26.7
Std nTPM: 86.9
Median nTPM: 116.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 553.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 410.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 403.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 399.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 396.2
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 386.2
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 372.9
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 295.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 292.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 283.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 258.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 636.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 636.0
FF:10158-103A5 76 years, female 636.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 242.1
Pig sample Sample description nTPM
Midbrain
nTPM: 207.4
Samples: 4

Max nTPM: 421.8
Min nTPM: 99.9
Sample A Female 421.8
Sample B Female 198.7
Sample C Male 99.9
Sample D Male 109.1
Periaqueductal gray
nTPM: 129.3
Samples: 3

Max nTPM: 168.7
Min nTPM: 93.6
Sample B Female 168.7
Sample C Male 93.6
Sample D Male 125.7
Substantia nigra
nTPM: 199.9
Samples: 4

Max nTPM: 327.0
Min nTPM: 139.9
Sample A Female 178.6
Sample B Female 139.9
Sample C Male 154.2
Sample D Male 327.0
Superior colliculi
nTPM: 242.2
Samples: 4

Max nTPM: 483.7
Min nTPM: 145.0
Sample A Female 158.1
Sample B Female 483.7
Sample C Male 145.0
Sample D Male 181.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 329.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 329.9
Samples: 4

Max nTPM: 352.6
Min nTPM: 308.9
Sample A Male 308.9
Sample B Male 319.1
Sample C Female 352.6
Sample D Female 338.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 12.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 12.3
70613967 Antisense, RP_050725_01_C07, Mouse strain C57BL/6J (56 days, male) 14.9
77413700 Antisense, RP_070205_01_E04, Mouse strain C57BL/6J (56 days, male) 12.4
532631 Antisense, RP_040810_02_G06, Mouse strain C57BL/6J (56 days, male) 9.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.