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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:111.0 nTPM
HPA:111.0 nTPM
GTEx:120.9 nTPM
FANTOM5:170.6 Scaled Tags Per Million
Pig:87.1 nTPM
Mouse:834.0 nTPM
Allen mouse:7.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA023700
Glial cells Not detected
Neuronal cells Low



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 111.0
Sample id Sample description nTPM
Hippocampus
nTPM: 78.6
1911 Female, age 85, right hemisphere 92.9
2529 Female, age 94, left hemisphere 86.2
2621 Female, age 67, right hemisphere 84.4
1898 Male, age 80, left hemisphere 75.5
2148 Female, age 91, left hemisphere 66.9
1855 Male, age 76, left hemisphere 65.8
Dentate gyrus
nTPM: 82.8
2530 Female, age 94, left hemisphere 120.9
2010 Male, age 76, both hemispheres 86.5
2528 Male, age 74, both hemispheres 85.8
2246 Female, age 85, both hemispheres 73.1
2531 Female, age 67, both hemispheres 69.4
1927 Female, age 91, both hemispheres 61.3
Entorhinal gyrus
nTPM: 82.8
2117 Female, age 91, right hemisphere 132.4
2764 Male, age 80, right hemisphere 93.4
1938 Female, age 85, left hemisphere 73.0
2613 Female, age 94, left hemisphere 70.0
2686 Male, age 75, right hemisphere 64.2
1787 Male, age 76, left hemisphere 63.9
Hippocampus, CA1
nTPM: 67.3
2527 Male, age 74, both hemispheres 84.3
1873 Female, age 85, both hemispheres 74.0
2082 Female, age 91, right hemisphere 73.3
2749 Male, age 80, left hemisphere 62.8
2045 Male, age 76, both hemispheres 42.2
Hippocampus, CA2
nTPM: 91.9
2249 Male, age 74, both hemispheres 141.1
1963 Male, age 80, left hemisphere 102.9
2437 Female, age 94, left hemisphere 85.8
1940 Female, age 85, left hemisphere 81.3
2113 Female, age 91, right hemisphere 80.4
1892 Male, age 76, both hemispheres 59.8
Hippocampus, CA3
nTPM: 85.1
2436 Male, age 74, both hemispheres 189.9
1891 Female, age 85, both hemispheres 115.2
1867 Male, age 76, both hemispheres 71.5
2137 Male, age 80, left hemisphere 50.0
2620 Female, age 94, left hemisphere 42.0
2861 Female, age 67, both hemispheres 42.0
Parahippocampal cortex
nTPM: 70.6
2532 Female, age 72, left hemisphere 91.4
1990 Female, age 91, right hemisphere 89.4
2692 Male, age 74, both hemispheres 80.3
1850 Male, age 80, both hemispheres 75.2
2018 Male, age 76, both hemispheres 73.6
2245 Female, age 91, both hemispheres 70.2
1933 Female, age 85, both hemispheres 69.9
2693 Female, age 94, both hemispheres 60.2
2250 Female, age 67, right hemisphere 57.1
2622 Female, age 67, right hemisphere 38.5
Perirhinal gyrus
nTPM: 56.8
2521 Female, age 94, right hemisphere 63.3
2848 Male, age 76, right hemisphere 58.1
1847 Female, age 91, left hemisphere 55.2
1794 Male, age 80, right hemisphere 54.7
1841 Female, age 85, right hemisphere 52.8
Subiculum
nTPM: 111.0
2042 Male, age 76, both hemispheres 145.8
1901 Male, age 80, both hemispheres 125.6
2438 Female, age 94, left hemisphere 125.5
1977 Female, age 85, both hemispheres 108.0
2619 Male, age 74, both hemispheres 83.3
2729 Female, age 91, right hemisphere 77.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 120.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 120.9
Samples: 197

Max nTPM: 422.5
Min nTPM: 9.2
Std nTPM: 78.3
Median nTPM: 95.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 422.5
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 359.3
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 317.5
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 317.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 298.7
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 294.9
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 293.1
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 290.5
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 286.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 286.1
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 276.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 170.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 170.6
FF:10153-102I9 76 years, female 205.2
FF:10169-103B7 60 years, female 136.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 87.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 87.1
Samples: 4

Max nTPM: 133.2
Min nTPM: 24.5
Sample A Female 128.3
Sample B Female 62.5
Sample C Male 133.2
Sample D Male 24.5
Entorhinal cortex
nTPM: 27.4
Samples: 4

Max nTPM: 41.8
Min nTPM: 19.2
Sample A Female 24.3
Sample B Female 41.8
Sample C Male 19.2
Sample D Male 24.4
Subiculum
nTPM: 33.3
Samples: 4

Max nTPM: 41.1
Min nTPM: 25.0
Sample A Female 34.3
Sample B Female 41.1
Sample C Male 25.0
Sample D Male 32.7
Ventral hippocampus
nTPM: 58.1
Samples: 4

Max nTPM: 76.4
Min nTPM: 29.1
Sample A Female 70.9
Sample B Female 29.1
Sample C Male 56.0
Sample D Male 76.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 834.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 137.9
Samples: 4

Max nTPM: 155.6
Min nTPM: 97.1
Sample A Male 153.5
Sample B Male 145.5
Sample C Female 155.6
Sample D Female 97.1
Hippocampal formation
nTPM: 834.0
Samples: 4

Max nTPM: 1582.6
Min nTPM: 120.8
Sample A Male 120.8
Sample B Male 508.6
Sample C Female 1124.0
Sample D Female 1582.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.3
70613967 Antisense, RP_050725_01_C07, Mouse strain C57BL/6J (56 days, male) 7.8
532631 Antisense, RP_040810_02_G06, Mouse strain C57BL/6J (56 days, male) 7.2
77413700 Antisense, RP_070205_01_E04, Mouse strain C57BL/6J (56 days, male) 6.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.