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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:43.9 nTPM
HPA:43.9 nTPM
GTEx:49.0 nTPM
FANTOM5:20.8 Scaled Tags Per Million
Mouse:56.4 nTPM
Allen mouse:1.2 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA020961Antibody HPA059109
Glial cells Not detectedMedium
Neuronal cells LowNot detected




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 43.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 41.7
2481 Female, age 94, left hemisphere 46.4
1857 Female, age 85, left hemisphere 43.0
2290 Female, age 72, unknown 41.7
2846 Female, age 79, unknown 41.7
2288 Male, age 75, left hemisphere 41.4
1854 Male, age 80, left hemisphere 41.1
2289 Male, age 61, right hemisphere 39.7
1781 Male, age 74, unknown 38.7
Claustrum
nTPM: 38.5
2491 Male, age 75, both hemispheres 40.6
2198 Male, age 80, both hemispheres 39.6
1956 Male, age 74, unknown 38.9
2568 Male, age 61, both hemispheres 38.4
2196 Female, age 79, unknown 38.2
2392 Female, age 94, both hemispheres 38.1
2645 Female, age 72, unknown 37.8
2292 Female, age 85, both hemispheres 37.4
2284 Female, age 91, both hemispheres 37.1
Globus pallidus, externus
nTPM: 43.9
2772 Female, age 79, unknown 46.2
1996 Male, age 80, right hemisphere 45.1
2646 Male, age 61, right hemisphere 44.9
2395 Male, age 75, both hemispheres 43.4
2567 Female, age 72, unknown 40.1
Globus pallidus, internus
nTPM: 42.2
2483 Female, age 94, right hemisphere 44.8
2287 Male, age 75, right hemisphere 44.4
2037 Male, age 80, right hemisphere 43.5
2778 Female, age 91, both hemispheres 43.5
1818 Male, age 74, unknown 41.8
2111 Female, age 85, right hemisphere 39.7
2566 Female, age 72, unknown 38.0
Nucleus accumbens
nTPM: 40.4
2286 Male, age 75, left hemisphere 42.5
1856 Female, age 91, right hemisphere 42.1
1806 Female, age 85, left hemisphere 42.0
2391 Female, age 94, left hemisphere 39.9
1783 Male, age 74, unknown 39.7
2732 Male, age 80, right hemisphere 39.3
2824 Male, age 61, right hemisphere 38.9
2698 Female, age 72, unknown 38.7
Nucleus basalis of Meynert
nTPM: 40.8
2569 Male, age 61, both hemispheres 44.1
2484 Female, age 94, left hemisphere 40.7
2393 Male, age 80, right hemisphere 39.3
2821 Male, age 75, both hemispheres 39.2
Nucleus of the diagonal band
nTPM: 39.7
1812 Female, age 91, both hemispheres 41.9
2775 Male, age 80, right hemisphere 40.3
1979 Male, age 74, unknown 39.8
2029 Male, age 61, right hemisphere 38.5
2195 Female, age 85, both hemispheres 38.2
Olfactory tubercle
nTPM: 38.8
1846 Male, age 80, right hemisphere 40.8
1998 Female, age 91, both hemispheres 39.2
2856 Male, age 75, right hemisphere 37.8
2487 Female, age 94, left hemisphere 37.3
Putamen
nTPM: 39.8
2482 Female, age 94, left hemisphere 41.0
2466 Female, age 79, unknown 40.6
2647 Male, age 75, left hemisphere 39.9
1838 Male, age 80, right hemisphere 39.8
2489 Female, age 72, unknown 39.5
1829 Male, age 74, unknown 39.3
1937 Female, age 91, right hemisphere 38.9
Septal nuclei
nTPM: 39.8
2031 Female, age 72, unknown 42.0
2009 Female, age 91, both hemispheres 40.4
1960 Male, age 74, unknown 40.2
2394 Male, age 61, left hemisphere 39.5
2059 Female, age 85, both hemispheres 39.3
2629 Female, age 94, right hemisphere 38.6
2199 Male, age 80, right hemisphere 38.5

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 49.0
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 43.8
Samples: 246

Max nTPM: 105.9
Min nTPM: 16.9
Std nTPM: 12.8
Median nTPM: 42.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 105.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 98.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 88.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 88.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 77.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 76.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 76.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 76.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 75.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 74.2
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 71.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.3
Samples: 246

Max nTPM: 145.2
Min nTPM: 13.1
Std nTPM: 14.7
Median nTPM: 40.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 145.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 110.0
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 92.8
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 79.5
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 77.6
GTEX-1A8G6-0011-R6b-SM-7P8PE 60-69 years, male 76.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 76.7
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 76.2
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 76.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 73.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 70.8
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Brain - Putamen (basal ganglia)
Average nTPM: 49.0
Samples: 205

Max nTPM: 111.3
Min nTPM: 16.7
Std nTPM: 14.9
Median nTPM: 47.0
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 111.3
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 100.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 96.6
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 91.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 86.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 83.0
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 82.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 80.7
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 77.4
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 76.2
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 76.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 18.8
FF:10164-103B2 76 years, female 18.8
Globus pallidus
Scaled Tags Per Million: 18.9
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 18.9
Nucleus accumbens
Scaled Tags Per Million: 20.1
FF:10037-101F1 23-56 years, mixed 20.1
Putamen
Scaled Tags Per Million: 20.8
FF:10176-103C5 60 years, female 20.8

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 56.4
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 41.1
Samples: 4

Max nTPM: 46.2
Min nTPM: 38.3
Sample A Male 46.2
Sample B Male 38.9
Sample C Female 40.8
Sample D Female 38.3
Septum
nTPM: 56.4
Samples: 4

Max nTPM: 62.9
Min nTPM: 48.8
Sample A Male 51.9
Sample B Male 62.1
Sample C Female 62.9
Sample D Female 48.8
Ventral forebrain
nTPM: 45.8
Samples: 4

Max nTPM: 57.7
Min nTPM: 40.4
Sample A Male 43.4
Sample B Male 41.5
Sample C Female 57.7
Sample D Female 40.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.2
76003661 Antisense, RP_060608_03_A05, Mouse strain C57BL/6J (56 days, male) 1.2
Pallidum
Expression energy: 0.9
76003661 Antisense, RP_060608_03_A05, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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