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BPHL
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.2 nTPM
HPA:10.2 nTPM
GTEx:12.0 nTPM
FANTOM5:11.4 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:40.7 nTPM
Allen mouse:3.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 8.0
2219 Male, age 76, both hemispheres 9.6
1827 Male, age 72, unknown 8.5
2666 Male, age 74, left hemisphere 8.5
2411 Female, age 72, unknown 8.3
2828 Female, age 72, unknown 8.2
1870 Female, age 42, unknown 7.9
1830 Male, age 51, unknown 7.5
2019 Male, age 18, unknown 7.4
2586 Male, age 75, left hemisphere 7.1
1833 Male, age 53, unknown 6.7
Dorsal raphe nucleus
nTPM: 8.7
2750 Male, age 76, both hemispheres 10.1
2047 Male, age 72, unknown 9.7
2016 Female, age 72, unknown 8.1
2298 Female, age 72, unknown 8.1
1828 Male, age 53, unknown 7.5
Inferior colliculus
nTPM: 8.3
1848 Female, age 42, unknown 9.3
1890 Male, age 53, unknown 8.2
2097 Female, age 72, unknown 7.9
2849 Male, age 72, unknown 7.8
Median raphe nucleus
nTPM: 10.2
2220 Male, age 76, midline 10.2
Pedunculopontine tegmental nucleus
nTPM: 8.4
2334 Male, age 80, both hemispheres 8.6
1921 Female, age 85, both hemispheres 8.5
2338 Male, age 61, both hemispheres 8.0
Periaquaductal grey, anterior
nTPM: 8.1
1947 Male, age 18, unknown 8.5
1795 Male, age 51, unknown 8.2
2502 Female, age 75, unknown 7.5
Periaquaductal grey, dorsal
nTPM: 8.4
1840 Male, age 53, unknown 9.7
1831 Male, age 72, unknown 8.6
2850 Male, age 76, both hemispheres 8.2
2464 Female, age 72, unknown 7.1
Periaquaductal grey, lateral
nTPM: 8.8
2272 Male, age 74, both hemispheres 9.7
2053 Male, age 18, unknown 9.1
2140 Male, age 76, both hemispheres 7.7
Pretectal area
nTPM: 8.3
2273 Male, age 74, both hemispheres 11.3
2667 Female, age 75, unknown 9.7
1816 Male, age 51, unknown 8.5
1944 Female, age 72, unknown 8.4
2316 Male, age 76, right hemisphere 8.4
2825 Male, age 18, unknown 8.4
2224 Female, age 72, unknown 8.3
2007 Male, age 72, unknown 8.1
1815 Male, age 53, unknown 7.5
1817 Female, age 42, unknown 7.3
2407 Male, age 75, both hemispheres 5.5
Red nucleus
nTPM: 7.4
1821 Female, age 72, unknown 9.3
2584 Male, age 75, left hemisphere 8.7
1904 Male, age 53, unknown 8.6
2823 Male, age 76, right hemisphere 7.6
1865 Male, age 51, unknown 7.2
2588 Male, age 74, left hemisphere 7.2
2785 Male, age 18, unknown 7.0
1954 Female, age 42, unknown 6.9
2227 Male, age 72, unknown 6.7
2503 Female, age 72, unknown 6.7
2769 Male, age 72, unknown 6.7
2725 Female, age 75, unknown 6.0
Substantia nigra
nTPM: 9.0
2241 Male, age 72, unknown 11.1
1941 Male, age 53, unknown 10.5
1851 Male, age 51, unknown 9.9
2409 Female, age 72, unknown 9.5
2665 Male, age 74, both hemispheres 9.2
2590 Female, age 75, unknown 8.9
1916 Female, age 42, unknown 8.6
2583 Male, age 75, right hemisphere 8.1
2699 Male, age 18, unknown 7.5
1889 Female, age 72, unknown 7.2
Superior colliculus
nTPM: 8.1
2587 Male, age 74, left hemisphere 9.7
2261 Male, age 18, unknown 9.6
2668 Female, age 75, unknown 8.9
1895 Male, age 76, right hemisphere 8.5
1839 Male, age 51, unknown 8.3
2087 Female, age 72, unknown 7.9
2664 Male, age 75, both hemispheres 7.5
1796 Male, age 53, unknown 7.3
1913 Female, age 42, unknown 7.0
1995 Male, age 72, unknown 6.8
Ventral tegmental area
nTPM: 9.2
1915 Female, age 42, unknown 10.7
2021 Male, age 53, unknown 9.5
2410 Female, age 72, unknown 9.5
2218 Male, age 76, both hemispheres 9.2
1942 Male, age 51, unknown 8.2
2223 Female, age 72, unknown 7.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.0
Samples: 139

Max nTPM: 34.7
Min nTPM: 4.3
Std nTPM: 4.6
Median nTPM: 11.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 34.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 24.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 22.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.8
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 20.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 20.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 19.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 19.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 19.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 19.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 19.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 11.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 11.4
FF:10158-103A5 76 years, female 11.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 22.5
Pig sample Sample description nTPM
Midbrain
nTPM: 22.6
Samples: 4

Max nTPM: 25.8
Min nTPM: 19.8
Sample A Female 23.1
Sample B Female 19.8
Sample C Male 21.5
Sample D Male 25.8
Periaqueductal gray
nTPM: 21.6
Samples: 3

Max nTPM: 24.1
Min nTPM: 19.2
Sample B Female 19.2
Sample C Male 24.1
Sample D Male 21.5
Substantia nigra
nTPM: 20.4
Samples: 4

Max nTPM: 24.9
Min nTPM: 16.2
Sample A Female 24.9
Sample B Female 18.3
Sample C Male 22.2
Sample D Male 16.2
Superior colliculi
nTPM: 19.7
Samples: 4

Max nTPM: 26.3
Min nTPM: 15.3
Sample A Female 26.3
Sample B Female 15.3
Sample C Male 17.2
Sample D Male 20.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 40.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 40.7
Samples: 4

Max nTPM: 42.7
Min nTPM: 39.2
Sample A Male 42.7
Sample B Male 40.0
Sample C Female 41.0
Sample D Female 39.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.2
71608345 Antisense, RP_050927_01_E01, Mouse strain C57BL/6J (56 days, male) 3.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.