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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:54.3 nTPM
HPA:54.3 nTPM
GTEx:24.2 nTPM
FANTOM5:108.0 Scaled Tags Per Million
Pig:94.1 nTPM
Mouse:86.3 nTPM
Allen mouse:11.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA070249Antibody CAB003763
Glial cells Not detectedMedium
Neuronal cells LowMedium





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 54.3
Sample id Sample description nTPM
Hippocampus
nTPM: 44.8
2621 Female, age 67, right hemisphere 52.1
2529 Female, age 94, left hemisphere 49.2
1855 Male, age 76, left hemisphere 49.0
2148 Female, age 91, left hemisphere 44.2
1898 Male, age 80, left hemisphere 38.9
1911 Female, age 85, right hemisphere 35.3
Dentate gyrus
nTPM: 35.5
2531 Female, age 67, both hemispheres 43.2
2528 Male, age 74, both hemispheres 38.9
2010 Male, age 76, both hemispheres 36.0
1927 Female, age 91, both hemispheres 35.8
2246 Female, age 85, both hemispheres 34.9
2530 Female, age 94, left hemisphere 24.4
Entorhinal gyrus
nTPM: 54.3
2613 Female, age 94, left hemisphere 78.3
1938 Female, age 85, left hemisphere 56.2
2764 Male, age 80, right hemisphere 55.6
2686 Male, age 75, right hemisphere 46.0
2117 Female, age 91, right hemisphere 45.1
1787 Male, age 76, left hemisphere 44.5
Hippocampus, CA1
nTPM: 47.5
2527 Male, age 74, both hemispheres 61.3
2749 Male, age 80, left hemisphere 54.2
2082 Female, age 91, right hemisphere 47.6
1873 Female, age 85, both hemispheres 39.4
2045 Male, age 76, both hemispheres 34.9
Hippocampus, CA2
nTPM: 40.7
1963 Male, age 80, left hemisphere 57.8
2113 Female, age 91, right hemisphere 51.5
1892 Male, age 76, both hemispheres 39.1
2437 Female, age 94, left hemisphere 35.0
1940 Female, age 85, left hemisphere 31.5
2249 Male, age 74, both hemispheres 29.0
Hippocampus, CA3
nTPM: 43.7
2861 Female, age 67, both hemispheres 56.2
2137 Male, age 80, left hemisphere 55.2
1867 Male, age 76, both hemispheres 42.2
2620 Female, age 94, left hemisphere 38.9
1891 Female, age 85, both hemispheres 37.7
2436 Male, age 74, both hemispheres 31.8
Parahippocampal cortex
nTPM: 49.3
2692 Male, age 74, both hemispheres 57.4
2018 Male, age 76, both hemispheres 56.7
1850 Male, age 80, both hemispheres 54.8
2622 Female, age 67, right hemisphere 52.2
2245 Female, age 91, both hemispheres 48.5
1933 Female, age 85, both hemispheres 47.8
2532 Female, age 72, left hemisphere 45.5
1990 Female, age 91, right hemisphere 45.4
2250 Female, age 67, right hemisphere 43.9
2693 Female, age 94, both hemispheres 40.4
Perirhinal gyrus
nTPM: 48.6
1847 Female, age 91, left hemisphere 66.2
2521 Female, age 94, right hemisphere 48.8
1794 Male, age 80, right hemisphere 44.8
2848 Male, age 76, right hemisphere 43.3
1841 Female, age 85, right hemisphere 39.7
Subiculum
nTPM: 40.4
2619 Male, age 74, both hemispheres 52.6
2729 Female, age 91, right hemisphere 40.4
1977 Female, age 85, both hemispheres 39.9
1901 Male, age 80, both hemispheres 37.4
2438 Female, age 94, left hemisphere 36.8
2042 Male, age 76, both hemispheres 35.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 24.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 24.2
Samples: 197

Max nTPM: 69.8
Min nTPM: 7.7
Std nTPM: 10.8
Median nTPM: 20.8
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 69.8
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 57.0
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 52.2
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 51.3
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 50.4
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 50.1
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 49.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 49.7
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 48.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 47.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 46.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 108.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 108.0
FF:10153-102I9 76 years, female 122.9
FF:10169-103B7 60 years, female 93.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 94.1
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 90.2
Samples: 4

Max nTPM: 103.8
Min nTPM: 80.9
Sample A Female 103.8
Sample B Female 92.3
Sample C Male 80.9
Sample D Male 83.7
Entorhinal cortex
nTPM: 94.1
Samples: 4

Max nTPM: 101.9
Min nTPM: 85.5
Sample A Female 101.9
Sample B Female 89.6
Sample C Male 99.4
Sample D Male 85.5
Subiculum
nTPM: 87.7
Samples: 4

Max nTPM: 114.7
Min nTPM: 73.6
Sample A Female 114.7
Sample B Female 83.8
Sample C Male 78.6
Sample D Male 73.6
Ventral hippocampus
nTPM: 92.6
Samples: 4

Max nTPM: 107.3
Min nTPM: 77.6
Sample A Female 83.2
Sample B Female 77.6
Sample C Male 107.3
Sample D Male 102.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.3
Samples: 4

Max nTPM: 90.7
Min nTPM: 82.1
Sample A Male 90.7
Sample B Male 82.1
Sample C Female 83.2
Sample D Female 89.0
Hippocampal formation
nTPM: 61.3
Samples: 4

Max nTPM: 70.0
Min nTPM: 57.3
Sample A Male 70.0
Sample B Male 59.6
Sample C Female 58.4
Sample D Female 57.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 11.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 11.2
70305395 Antisense, RP_050609_04_B01, Mouse strain C57BL/6J (56 days, male) 11.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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