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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Not detected
RNA expressioni
Consensus:244.3 nTPM
HPA:244.3 nTPM
GTEx:212.0 nTPM
FANTOM5:182.4 Scaled Tags Per Million
Pig:199.0 nTPM
Mouse:169.4 nTPM
Allen mouse:6.9 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041334
Glial cells Low
Neuronal cells Not detected



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 244.3
Sample id Sample description nTPM
Hippocampus
nTPM: 86.6
2529 Female, age 94, left hemisphere 101.7
1911 Female, age 85, right hemisphere 101.0
1898 Male, age 80, left hemisphere 97.1
2621 Female, age 67, right hemisphere 90.6
1855 Male, age 76, left hemisphere 84.3
2148 Female, age 91, left hemisphere 44.6
Dentate gyrus
nTPM: 73.9
2246 Female, age 85, both hemispheres 94.1
2010 Male, age 76, both hemispheres 71.7
2530 Female, age 94, left hemisphere 71.7
2531 Female, age 67, both hemispheres 70.7
2528 Male, age 74, both hemispheres 70.1
1927 Female, age 91, both hemispheres 64.8
Entorhinal gyrus
nTPM: 203.9
2764 Male, age 80, right hemisphere 256.7
2613 Female, age 94, left hemisphere 248.7
1938 Female, age 85, left hemisphere 213.8
1787 Male, age 76, left hemisphere 198.4
2686 Male, age 75, right hemisphere 186.1
2117 Female, age 91, right hemisphere 119.7
Hippocampus, CA1
nTPM: 100.1
2749 Male, age 80, left hemisphere 126.4
2082 Female, age 91, right hemisphere 122.8
2045 Male, age 76, both hemispheres 106.6
2527 Male, age 74, both hemispheres 88.4
1873 Female, age 85, both hemispheres 56.6
Hippocampus, CA2
nTPM: 110.1
2437 Female, age 94, left hemisphere 144.2
1892 Male, age 76, both hemispheres 139.8
2113 Female, age 91, right hemisphere 120.1
2249 Male, age 74, both hemispheres 112.2
1940 Female, age 85, left hemisphere 102.7
1963 Male, age 80, left hemisphere 41.8
Hippocampus, CA3
nTPM: 103.1
1867 Male, age 76, both hemispheres 163.1
2137 Male, age 80, left hemisphere 151.2
1891 Female, age 85, both hemispheres 109.3
2436 Male, age 74, both hemispheres 81.1
2861 Female, age 67, both hemispheres 61.7
2620 Female, age 94, left hemisphere 51.9
Parahippocampal cortex
nTPM: 195.1
1850 Male, age 80, both hemispheres 243.8
2532 Female, age 72, left hemisphere 224.7
2693 Female, age 94, both hemispheres 220.0
2622 Female, age 67, right hemisphere 213.7
2245 Female, age 91, both hemispheres 200.0
1933 Female, age 85, both hemispheres 198.0
2250 Female, age 67, right hemisphere 174.4
2018 Male, age 76, both hemispheres 173.8
1990 Female, age 91, right hemisphere 171.5
2692 Male, age 74, both hemispheres 131.1
Perirhinal gyrus
nTPM: 244.3
2848 Male, age 76, right hemisphere 305.1
1794 Male, age 80, right hemisphere 261.7
1847 Female, age 91, left hemisphere 250.7
1841 Female, age 85, right hemisphere 242.0
2521 Female, age 94, right hemisphere 162.2
Subiculum
nTPM: 129.7
1977 Female, age 85, both hemispheres 180.7
1901 Male, age 80, both hemispheres 141.9
2438 Female, age 94, left hemisphere 138.3
2042 Male, age 76, both hemispheres 130.1
2619 Male, age 74, both hemispheres 120.3
2729 Female, age 91, right hemisphere 66.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 212.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 212.0
Samples: 197

Max nTPM: 511.9
Min nTPM: 27.7
Std nTPM: 98.0
Median nTPM: 188.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 511.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 478.7
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 468.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 462.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 452.5
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 434.1
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 420.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 417.5
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 416.0
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 406.2
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 405.9
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 182.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 182.4
FF:10169-103B7 60 years, female 188.3
FF:10153-102I9 76 years, female 176.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 199.0
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 124.2
Samples: 4

Max nTPM: 175.9
Min nTPM: 61.4
Sample A Female 133.1
Sample B Female 126.3
Sample C Male 175.9
Sample D Male 61.4
Entorhinal cortex
nTPM: 177.7
Samples: 4

Max nTPM: 225.2
Min nTPM: 123.8
Sample A Female 192.0
Sample B Female 123.8
Sample C Male 225.2
Sample D Male 169.9
Subiculum
nTPM: 199.0
Samples: 4

Max nTPM: 287.8
Min nTPM: 131.7
Sample A Female 287.8
Sample B Female 162.5
Sample C Male 214.1
Sample D Male 131.7
Ventral hippocampus
nTPM: 172.9
Samples: 4

Max nTPM: 252.9
Min nTPM: 110.0
Sample A Female 136.1
Sample B Female 110.0
Sample C Male 252.9
Sample D Male 192.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 169.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 169.5
Samples: 4

Max nTPM: 206.6
Min nTPM: 131.0
Sample A Male 131.0
Sample B Male 155.1
Sample C Female 185.1
Sample D Female 206.6
Hippocampal formation
nTPM: 103.8
Samples: 4

Max nTPM: 139.7
Min nTPM: 76.5
Sample A Male 139.7
Sample B Male 83.7
Sample C Female 76.5
Sample D Female 115.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.9
69113656 Antisense, RP_050316_02_E05, Mouse strain C57BL/6J (56 days, male) 7.8
73592534 Antisense, RP_051017_01_E10, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.