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BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:258.5 nTPM
HPA:258.5 nTPM
GTEx:103.4 nTPM
FANTOM5:353.0 Scaled Tags Per Million
Pig:120.7 nTPM
Mouse:149.2 nTPM
Allen mouse:6.9 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA041334
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 258.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 53.9
1781 Male, age 74, unknown 106.0
1857 Female, age 85, left hemisphere 57.7
2289 Male, age 61, right hemisphere 57.1
2290 Female, age 72, unknown 54.9
2288 Male, age 75, left hemisphere 44.9
2481 Female, age 94, left hemisphere 40.5
1854 Male, age 80, left hemisphere 39.5
2846 Female, age 79, unknown 30.6
Claustrum
nTPM: 174.0
2491 Male, age 75, both hemispheres 206.2
2568 Male, age 61, both hemispheres 196.4
2284 Female, age 91, both hemispheres 195.2
2645 Female, age 72, unknown 182.8
2198 Male, age 80, both hemispheres 180.4
1956 Male, age 74, unknown 176.6
2392 Female, age 94, both hemispheres 162.7
2292 Female, age 85, both hemispheres 143.9
2196 Female, age 79, unknown 121.4
Globus pallidus, externus
nTPM: 29.9
2395 Male, age 75, both hemispheres 42.9
2646 Male, age 61, right hemisphere 35.8
2772 Female, age 79, unknown 26.8
1996 Male, age 80, right hemisphere 23.3
2567 Female, age 72, unknown 20.7
Globus pallidus, internus
nTPM: 30.8
2778 Female, age 91, both hemispheres 39.7
2566 Female, age 72, unknown 39.0
2483 Female, age 94, right hemisphere 34.2
2111 Female, age 85, right hemisphere 30.1
2287 Male, age 75, right hemisphere 27.3
2037 Male, age 80, right hemisphere 24.4
1818 Male, age 74, unknown 21.2
Nucleus accumbens
nTPM: 56.8
1856 Female, age 91, right hemisphere 75.7
2732 Male, age 80, right hemisphere 61.3
2391 Female, age 94, left hemisphere 57.0
1806 Female, age 85, left hemisphere 54.0
2698 Female, age 72, unknown 52.5
1783 Male, age 74, unknown 52.2
2824 Male, age 61, right hemisphere 51.9
2286 Male, age 75, left hemisphere 50.1
Nucleus basalis of Meynert
nTPM: 44.9
2821 Male, age 75, both hemispheres 56.9
2484 Female, age 94, left hemisphere 48.0
2569 Male, age 61, both hemispheres 39.1
2393 Male, age 80, right hemisphere 35.5
Nucleus of the diagonal band
nTPM: 258.5
1812 Female, age 91, both hemispheres 309.4
2195 Female, age 85, both hemispheres 301.2
2775 Male, age 80, right hemisphere 300.4
2029 Male, age 61, right hemisphere 283.7
1979 Male, age 74, unknown 97.9
Olfactory tubercle
nTPM: 249.3
1998 Female, age 91, both hemispheres 297.6
2487 Female, age 94, left hemisphere 251.5
1846 Male, age 80, right hemisphere 239.7
2856 Male, age 75, right hemisphere 208.4
Putamen
nTPM: 30.1
1937 Female, age 91, right hemisphere 47.6
2482 Female, age 94, left hemisphere 34.7
2647 Male, age 75, left hemisphere 32.1
1838 Male, age 80, right hemisphere 29.3
2466 Female, age 79, unknown 24.1
1829 Male, age 74, unknown 24.0
2489 Female, age 72, unknown 19.0
Septal nuclei
nTPM: 223.5
1960 Male, age 74, unknown 320.8
2031 Female, age 72, unknown 317.6
2629 Female, age 94, right hemisphere 282.6
2009 Female, age 91, both hemispheres 268.0
2059 Female, age 85, both hemispheres 185.5
2394 Male, age 61, left hemisphere 113.3
2199 Male, age 80, right hemisphere 76.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 103.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 95.5
Samples: 246

Max nTPM: 376.2
Min nTPM: 42.7
Std nTPM: 34.7
Median nTPM: 88.0
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 376.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 279.7
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 187.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 173.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 171.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 165.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 163.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 163.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 163.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 153.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 151.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 103.4
Samples: 246

Max nTPM: 498.7
Min nTPM: 24.7
Std nTPM: 45.8
Median nTPM: 97.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 498.7
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 398.9
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 317.9
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 282.2
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 234.3
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 202.4
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 192.0
GTEX-13FXS-0011-R6b-SM-5L3F7 50-59 years, male 182.5
GTEX-T5JC-0011-R6A-SM-D3L87 20-29 years, male 178.6
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 160.6
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 159.0
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Brain - Putamen (basal ganglia)
Average nTPM: 69.9
Samples: 205

Max nTPM: 229.2
Min nTPM: 21.1
Std nTPM: 26.0
Median nTPM: 66.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 229.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 207.9
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 191.6
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 156.4
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 148.5
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 135.3
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 116.6
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 113.7
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 111.7
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 110.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 109.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 353.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 100.0
FF:10164-103B2 76 years, female 100.0
Globus pallidus
Scaled Tags Per Million: 52.2
FF:10175-103C4 60 years, female 60.7
FF:10161-103A8 76 years, female 43.7
Nucleus accumbens
Scaled Tags Per Million: 353.0
FF:10037-101F1 23-56 years, mixed 353.0
Putamen
Scaled Tags Per Million: 114.5
FF:10176-103C5 60 years, female 114.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 120.7
Pig sample Sample description nTPM
Caudate
nTPM: 57.9
Samples: 4

Max nTPM: 71.4
Min nTPM: 46.6
Sample A Female 50.9
Sample B Female 71.4
Sample C Male 62.6
Sample D Male 46.6
Putamen
nTPM: 46.3
Samples: 4

Max nTPM: 52.2
Min nTPM: 34.8
Sample A Female 48.9
Sample B Female 34.8
Sample C Male 52.2
Sample D Male 49.1
Septum
nTPM: 120.8
Samples: 4

Max nTPM: 212.0
Min nTPM: 73.6
Sample A Female 73.6
Sample B Female 100.0
Sample C Male 212.0
Sample D Male 97.4
Ventral pallidum
nTPM: 93.8
Samples: 4

Max nTPM: 203.1
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 57.9
Sample C Male 203.1
Sample D Male 69.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 149.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 61.4
Samples: 4

Max nTPM: 83.2
Min nTPM: 39.6
Sample A Male 39.6
Sample B Male 45.8
Sample C Female 77.0
Sample D Female 83.2
Septum
nTPM: 149.2
Samples: 4

Max nTPM: 198.2
Min nTPM: 126.0
Sample A Male 198.2
Sample B Male 126.0
Sample C Female 138.1
Sample D Female 134.6
Ventral forebrain
nTPM: 100.8
Samples: 4

Max nTPM: 116.7
Min nTPM: 84.7
Sample A Male 84.7
Sample B Male 116.7
Sample C Female 102.3
Sample D Female 99.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 6.9
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 3.6
69113656 Antisense, RP_050316_02_E05, Mouse strain C57BL/6J (56 days, male) 4.5
73592534 Antisense, RP_051017_01_E10, Mouse strain C57BL/6J (56 days, male) 2.7
Pallidum
Expression energy: 6.9
69113656 Antisense, RP_050316_02_E05, Mouse strain C57BL/6J (56 days, male) 8.4
73592534 Antisense, RP_051017_01_E10, Mouse strain C57BL/6J (56 days, male) 5.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.