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BASAL GANGLIA - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.2 nTPM
HPA:11.2 nTPM
GTEx:7.4 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:17.5 nTPM
Mouse:51.5 nTPM
Allen mouse:0.1 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 11.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.7
1781 Male, age 74, unknown 8.3
2846 Female, age 79, unknown 2.7
1854 Male, age 80, left hemisphere 1.3
2290 Female, age 72, unknown 1.1
1857 Female, age 85, left hemisphere 0.4
2288 Male, age 75, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 1.9
2491 Male, age 75, both hemispheres 7.2
2392 Female, age 94, both hemispheres 5.6
1956 Male, age 74, unknown 2.7
2568 Male, age 61, both hemispheres 1.0
2196 Female, age 79, unknown 0.5
2198 Male, age 80, both hemispheres 0.2
2645 Female, age 72, unknown 0.1
2284 Female, age 91, both hemispheres 0.0
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 2.1
1783 Male, age 74, unknown 5.5
2824 Male, age 61, right hemisphere 3.5
2698 Female, age 72, unknown 3.0
1856 Female, age 91, right hemisphere 2.4
2732 Male, age 80, right hemisphere 2.0
1806 Female, age 85, left hemisphere 0.5
2286 Male, age 75, left hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 1.1
2393 Male, age 80, right hemisphere 1.9
2821 Male, age 75, both hemispheres 1.3
2484 Female, age 94, left hemisphere 1.2
2569 Male, age 61, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 8.8
2029 Male, age 61, right hemisphere 16.6
2775 Male, age 80, right hemisphere 11.2
1812 Female, age 91, both hemispheres 8.5
2195 Female, age 85, both hemispheres 5.9
1979 Male, age 74, unknown 1.9
Olfactory tubercle
nTPM: 11.2
2487 Female, age 94, left hemisphere 12.4
1846 Male, age 80, right hemisphere 11.6
2856 Male, age 75, right hemisphere 11.5
1998 Female, age 91, both hemispheres 9.4
Putamen
nTPM: 1.9
1838 Male, age 80, right hemisphere 3.6
2489 Female, age 72, unknown 3.2
2482 Female, age 94, left hemisphere 2.9
2466 Female, age 79, unknown 1.9
1937 Female, age 91, right hemisphere 1.1
1829 Male, age 74, unknown 0.3
2647 Male, age 75, left hemisphere 0.0
Septal nuclei
nTPM: 6.6
2031 Female, age 72, unknown 12.5
2629 Female, age 94, right hemisphere 11.4
2009 Female, age 91, both hemispheres 8.3
2394 Male, age 61, left hemisphere 5.1
2199 Male, age 80, right hemisphere 3.7
1960 Male, age 74, unknown 3.6
2059 Female, age 85, both hemispheres 1.8

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 7.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 5.4
Samples: 246

Max nTPM: 37.4
Min nTPM: 0.2
Std nTPM: 4.5
Median nTPM: 4.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 37.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 24.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 23.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 18.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 16.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 16.3
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 16.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 15.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 15.0
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 13.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 13.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 7.1
Samples: 246

Max nTPM: 23.9
Min nTPM: 0.5
Std nTPM: 4.4
Median nTPM: 5.9
GTEX-1HT8W-0011-R6a-SM-CM2SY 30-39 years, male 23.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 21.8
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 19.6
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 18.3
GTEX-1J1OQ-0011-R6a-SM-ARU86 40-49 years, female 17.7
GTEX-11OF3-0011-R6b-SM-57WBG 60-69 years, male 17.5
GTEX-13SLX-0011-R6a-SM-5PNX4 50-59 years, female 17.4
GTEX-R55E-0011-R6A-SM-2TC5T 20-29 years, male 17.1
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 17.0
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 16.5
GTEX-11PRG-0011-R6b-SM-DO923 50-59 years, male 16.4
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Brain - Putamen (basal ganglia)
Average nTPM: 7.4
Samples: 205

Max nTPM: 35.5
Min nTPM: 0.3
Std nTPM: 6.1
Median nTPM: 6.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 35.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 34.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 27.4
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 24.4
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 24.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 23.8
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 22.8
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 20.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 19.5
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 19.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 17.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.9
FF:10164-103B2 76 years, female 25.9
Globus pallidus
Scaled Tags Per Million: 13.6
FF:10175-103C4 60 years, female 14.2
FF:10161-103A8 76 years, female 13.0
Nucleus accumbens
Scaled Tags Per Million: 33.2
FF:10037-101F1 23-56 years, mixed 33.2
Putamen
Scaled Tags Per Million: 23.8
FF:10176-103C5 60 years, female 23.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 17.5
Pig sample Sample description nTPM
Caudate
nTPM: 11.4
Samples: 4

Max nTPM: 17.4
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 6.7
Sample C Male 14.9
Sample D Male 17.4
Putamen
nTPM: 17.5
Samples: 4

Max nTPM: 31.3
Min nTPM: 6.7
Sample A Female 6.7
Sample B Female 15.4
Sample C Male 31.3
Sample D Male 16.6
Septum
nTPM: 9.1
Samples: 4

Max nTPM: 12.3
Min nTPM: 2.8
Sample A Female 11.7
Sample B Female 12.3
Sample C Male 9.5
Sample D Male 2.8
Ventral pallidum
nTPM: 14.6
Samples: 4

Max nTPM: 17.4
Min nTPM: 10.5
Sample A Female 15.4
Sample B Female 14.9
Sample C Male 17.4
Sample D Male 10.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 51.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 51.5
Samples: 4

Max nTPM: 59.5
Min nTPM: 40.3
Sample A Male 56.3
Sample B Male 59.5
Sample C Female 40.3
Sample D Female 49.8
Septum
nTPM: 7.4
Samples: 4

Max nTPM: 11.1
Min nTPM: 5.0
Sample A Male 11.1
Sample B Male 5.0
Sample C Female 5.2
Sample D Female 8.2
Ventral forebrain
nTPM: 23.9
Samples: 4

Max nTPM: 31.2
Min nTPM: 18.8
Sample A Male 25.3
Sample B Male 31.2
Sample C Female 20.2
Sample D Female 18.8

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
2708 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1
2707 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.1
2708 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.1
2707 Antisense, RP_040507_01_F11, Mouse strain C57BL/6J (56 days, male) 0.0

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The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.