Single cell type - NDUFAF1 - The Human Protein Atlas

GENERAL INFORMATIONⁱ General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene nameⁱ Official gene symbol, which is typically a short form of the gene name, according to HGNC.	NDUFAF1
Gene descriptionⁱ Full gene name according to HGNC.	NADH:ubiquinone oxidoreductase complex assembly factor 1
Protein classⁱ Assigned HPA protein class(es) for the encoded protein(s). Read more	Disease related genes Human disease related genes
Predicted locationⁱ All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions. Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached. Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s). The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location. Read more	Intracellular
Number of transcriptsⁱ Number of protein-coding transcripts from the gene as defined by Ensembl.	6

HUMAN PROTEIN ATLAS INFORMATIONⁱ Summary of RNA expression and protein localization based on data generated within the Human Protein Atlas project.
Single cell type expression clusterⁱ The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity. Read more	Spermatocytes - Spermatogenesis (mainly)
Single cell type specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Cell type enhanced (Proximal tubular cells, Spermatocytes)
Immune cell specificityⁱ The RNA specificity category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected. Read more	Low immune cell specificity
Immune cell distributionⁱ The RNA distribution category is based on mRNA expression levels in the analyzed samples based on data from HPA. The categories include: detected in all, detected in many, detected in some, detected in single and not detected. Read more	Detected in all
Cell line specificityⁱ RNA specificity category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into six different categories (enriched, group enriched, enhanced, low specificity and not detected) according to their RNA expression levels across the panel of cell lines. Read more	Low cell line specificity
Cell line distributionⁱ RNA distribution category based on RNA sequencing data from all cell lines in the Human Protein Atlas. Genes are classified into five different categories (detected in all, detected in many, detected in some, detected in single and not detected) according to their pattern of detected RNA expression across the panel of cell lines. Read more	Detected in all
Protein evidenceⁱ Evidence score for genes based on UniProt protein existence (UniProt evidence); a Human Protein Atlas antibody- or RNA based score (HPA evidence); and evidence based on PeptideAtlas (MS evidence). The avaliable scores are evidence at protein level, evidence at transcript level, no evidence, or not avaliable. Read more	Evidence at protein level

SINGLE CELL TYPESⁱ A summary of single cell RNA (nTPM) from all single cell types. Color-coding is based on cell type groups, each consisting of cell types with functional features in common.
Single cell types Group Expression Alphabetical RNA single cell type specificity: Cell type enhanced (Proximal tubular cells, Spermatocytes)

SINGLE CELL TISSUES OVERVIEWⁱ An overview of all tissues where single cell type expression has been analyzed. Each tissue name and corresponding UMAP plot is clickable and redirects to the selected tissue.
Adipose tissue Bone marrow Brain Breast Bronchus Colon Endometrium Esophagus Eye Heart muscle Kidney Liver Lung Lymph node Ovary Pancreas Placenta Prostate Rectum Skeletal muscle Skin Small intestine Spleen Stomach Testis

EXPRESSION CLUSTERING & CORRELATIONⁱ

NDUFAF1 is part of cluster 66 Spermatocytes - Spermatogenesis with confidenceⁱ 0.51
507 genes in cluster

Go to interactive expression cluster page

15 nearest neighbours based on single cell type RNA expression

Neighbourⁱ Gene name according to HGNC.	Descriptionⁱ Gene description according to HGNC.	Correlationⁱ Correlation between the selected gene and neighboring gene. Correlation is calculated as Spearman correlation in PCA space based on the RNA-seq expression data. Read more	Clusterⁱ ID of the expression cluster of the neighboring gene. Read more
EMC2	ER membrane protein complex subunit 2	0.6258	26
MRPL47	Mitochondrial ribosomal protein L47	0.5993	66
COPS4	COP9 signalosome subunit 4	0.5481	66
LACTB2	Lactamase beta 2	0.5448	67
GPN3	GPN-loop GTPase 3	0.5327	66
CCNO	Cyclin O	0.5290	26
SNRNP35	Small nuclear ribonucleoprotein U11/U12 subunit 35	0.5249	26
MRPL39	Mitochondrial ribosomal protein L39	0.5134	66
ZP3	Zona pellucida glycoprotein 3	0.5025	26
FASTKD5	FAST kinase domains 5	0.4963	66
HIF1AN	Hypoxia inducible factor 1 subunit alpha inhibitor	0.4914	25
DLD	Dihydrolipoamide dehydrogenase	0.4894	39
MRPL46	Mitochondrial ribosomal protein L46	0.4888	39
PEX13	Peroxisomal biogenesis factor 13	0.4872	26
POMP	Proteasome maturation protein	0.4844	26

SINGLE CELL TISSUESⁱ Single cell RNA levels of annotated cell type clusters are shown separately for each analyzed tissue. For easier navigation across tissues, use the above Single cell tissue overview, where each tissue name and UMAP plot is clickable and redirects to the selected tissue, alternatively the grey browser on the left side of the window. Barchart shows nTPM levels in each annotated cluster of single cells. To the left, a UMAP plot illustrates the RNA expression profile. The tissue name and plots are clickable and redirect to a more detailed interactive page. Color-coding is based on cell type groups, each consisting of cell types with functional features in common. Please note that the same cell type may be found in several clusters.
Cluster Expression Alphabetical Adipose tissue
Cluster Expression Alphabetical Bone marrow
Cluster Expression Alphabetical Brain
Cluster Expression Alphabetical Breast
Cluster Expression Alphabetical Bronchus
Cluster Expression Alphabetical Colon
Cluster Expression Alphabetical Endometrium
Cluster Expression Alphabetical Esophagus
Cluster Expression Alphabetical Eye
Cluster Expression Alphabetical Heart muscle
Cluster Expression Alphabetical Kidney
Cluster Expression Alphabetical Liver
Cluster Expression Alphabetical Lung
Cluster Expression Alphabetical Lymph node
Cluster Expression Alphabetical Ovary
Cluster Expression Alphabetical Pancreas
Cluster Expression Alphabetical Placenta
Cluster Expression Alphabetical Prostate
Cluster Expression Alphabetical Rectum
Cluster Expression Alphabetical Skeletal muscle
Cluster Expression Alphabetical Skin
Cluster Expression Alphabetical Small intestine
Cluster Expression Alphabetical Spleen
Cluster Expression Alphabetical Stomach
Cluster Expression Alphabetical Testis

BLOODⁱ

Single cell data

Cluster

Expression

Alphabetical

PBMC

Flow sorted data

Lineage

Expression

Alphabetical

CELL LINESⁱ

Organ

Expression

Alphabetical

Adipocytes	7.7 nTPM
Breast	10.5 nTPM
Adipose tissue	4.9 nTPM

Alveolar cells type 1	12.8 nTPM
Lung	12.8 nTPM

Alveolar cells type 2	10.1 nTPM
Lung	10.1 nTPM

Astrocytes	6.5 nTPM
Brain	6.5 nTPM

B-cells	14.6 nTPM
Liver	35.1 nTPM
Kidney	28.5 nTPM
PBMC	21.4 nTPM
Bone marrow	12.3 nTPM
Breast	12.1 nTPM
Stomach	11.8 nTPM
Spleen	7.9 nTPM
Lymph node	6.5 nTPM
Adipose tissue	6.0 nTPM
Colon	4.8 nTPM

Dendritic cells	19.8 nTPM
PBMC	39.8 nTPM
Breast	12.8 nTPM
Adipose tissue	6.7 nTPM

Endothelial cells	11.1 nTPM
Pancreas	23.1 nTPM
Placenta	22.1 nTPM
Eye	15.4 nTPM
Heart muscle	12.8 nTPM
Skeletal muscle	12.0 nTPM
Ovary	11.5 nTPM
Breast	9.7 nTPM
Endometrium	9.3 nTPM
Testis	8.9 nTPM
Prostate	8.7 nTPM
Liver	7.3 nTPM
Skin	6.6 nTPM
Esophagus	4.6 nTPM
Lung	3.1 nTPM

Fibroblasts	12.5 nTPM
Heart muscle	28.7 nTPM
Placenta	20.3 nTPM
Ovary	15.9 nTPM
Breast	15.3 nTPM
Skeletal muscle	14.7 nTPM
Adipose tissue	9.3 nTPM
Skin	9.2 nTPM
Esophagus	8.1 nTPM
Prostate	7.2 nTPM
Lung	5.6 nTPM
Stomach	3.0 nTPM

Intestinal goblet cells	8.5 nTPM
Small intestine	11.7 nTPM
Colon	7.2 nTPM
Rectum	6.7 nTPM

Macrophages	16.2 nTPM
Pancreas	58.7 nTPM
Kidney	30.3 nTPM
Breast	17.0 nTPM
Lung	16.8 nTPM
Ovary	15.2 nTPM
Stomach	14.7 nTPM
Testis	14.5 nTPM
Spleen	14.5 nTPM
Endometrium	14.3 nTPM
Prostate	13.8 nTPM
Skeletal muscle	13.6 nTPM
Bone marrow	11.3 nTPM
Esophagus	4.8 nTPM
Adipose tissue	4.0 nTPM
PBMC	0.0 nTPM

Paneth cells	3.7 nTPM
Rectum	8.0 nTPM
Colon	3.3 nTPM
Small intestine	0.0 nTPM

Plasma cells	15.0 nTPM
Spleen	30.2 nTPM
Bone marrow	21.4 nTPM
Stomach	12.7 nTPM
Esophagus	6.1 nTPM
Adipose tissue	4.5 nTPM

Respiratory ciliated cells	30.6 nTPM
Bronchus	43.6 nTPM
Lung	17.5 nTPM

Smooth muscle cells	17.3 nTPM
Bronchus	44.3 nTPM
Pancreas	33.8 nTPM
Esophagus	18.6 nTPM
Ovary	14.8 nTPM
Breast	13.8 nTPM
Skeletal muscle	13.7 nTPM
Endometrium	12.5 nTPM
Heart muscle	11.6 nTPM
Skin	10.4 nTPM
Prostate	8.4 nTPM
Adipose tissue	7.9 nTPM

T-cells	12.3 nTPM
Kidney	32.9 nTPM
PBMC	22.0 nTPM
Esophagus	19.7 nTPM
Liver	17.0 nTPM
Breast	16.4 nTPM
Bone marrow	11.4 nTPM
Ovary	11.1 nTPM
Endometrium	9.9 nTPM
Prostate	9.5 nTPM
Colon	9.0 nTPM
Skeletal muscle	9.0 nTPM
Stomach	8.8 nTPM
Spleen	8.7 nTPM
Lung	7.6 nTPM
Lymph node	7.5 nTPM
Skin	5.0 nTPM
Adipose tissue	4.1 nTPM

Basal keratinocytes	4.7 nTPM
Skin	4.7 nTPM

Basal prostatic cells	15.8 nTPM
Prostate	15.8 nTPM

Basal respiratory cells	43.8 nTPM
Bronchus	43.8 nTPM

Basal squamous epithelial cells	9.6 nTPM
Esophagus	9.6 nTPM

Undifferentiated cells	11.9 nTPM
Small intestine	15.8 nTPM
Colon	10.6 nTPM
Rectum	9.2 nTPM

Adipose tissue

Bone marrow

Brain

Breast

Bronchus

Colon

Endometrium

Esophagus

Eye

Heart muscle

Kidney

Liver

Lung

Lymph node

Ovary

Pancreas

Placenta

Prostate

Rectum

Skeletal muscle

Skin

Small intestine

Spleen

Stomach

Testis

PBMC