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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:13.6 nTPM
FANTOM5:236.7 Scaled Tags Per Million
Pig:66.8 nTPM
Mouse:86.3 nTPM
Allen mouse:7.7 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052249
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Hippocampus
nTPM: 10.5
1898 Male, age 80, left hemisphere 15.5
1911 Female, age 85, right hemisphere 12.7
2621 Female, age 67, right hemisphere 11.5
2529 Female, age 94, left hemisphere 10.3
1855 Male, age 76, left hemisphere 7.9
2148 Female, age 91, left hemisphere 5.2
Dentate gyrus
nTPM: 11.6
2530 Female, age 94, left hemisphere 19.9
2010 Male, age 76, both hemispheres 15.1
1927 Female, age 91, both hemispheres 9.7
2531 Female, age 67, both hemispheres 9.0
2528 Male, age 74, both hemispheres 8.4
2246 Female, age 85, both hemispheres 7.2
Entorhinal gyrus
nTPM: 14.4
2117 Female, age 91, right hemisphere 19.7
2764 Male, age 80, right hemisphere 18.4
2686 Male, age 75, right hemisphere 15.1
2613 Female, age 94, left hemisphere 12.8
1938 Female, age 85, left hemisphere 12.0
1787 Male, age 76, left hemisphere 8.6
Hippocampus, CA1
nTPM: 10.4
2749 Male, age 80, left hemisphere 19.0
1873 Female, age 85, both hemispheres 11.4
2082 Female, age 91, right hemisphere 9.1
2527 Male, age 74, both hemispheres 9.1
2045 Male, age 76, both hemispheres 3.4
Hippocampus, CA2
nTPM: 13.6
1963 Male, age 80, left hemisphere 21.3
2437 Female, age 94, left hemisphere 14.4
1892 Male, age 76, both hemispheres 14.1
2113 Female, age 91, right hemisphere 11.2
2249 Male, age 74, both hemispheres 11.2
1940 Female, age 85, left hemisphere 9.7
Hippocampus, CA3
nTPM: 8.0
1891 Female, age 85, both hemispheres 17.2
1867 Male, age 76, both hemispheres 13.7
2137 Male, age 80, left hemisphere 13.3
2436 Male, age 74, both hemispheres 2.0
2861 Female, age 67, both hemispheres 1.0
2620 Female, age 94, left hemisphere 0.8
Parahippocampal cortex
nTPM: 10.9
1850 Male, age 80, both hemispheres 18.6
1990 Female, age 91, right hemisphere 16.3
2532 Female, age 72, left hemisphere 15.1
2692 Male, age 74, both hemispheres 14.3
1933 Female, age 85, both hemispheres 10.8
2693 Female, age 94, both hemispheres 9.8
2245 Female, age 91, both hemispheres 9.7
2018 Male, age 76, both hemispheres 7.7
2250 Female, age 67, right hemisphere 3.5
2622 Female, age 67, right hemisphere 3.5
Perirhinal gyrus
nTPM: 11.4
1794 Male, age 80, right hemisphere 15.9
1841 Female, age 85, right hemisphere 13.4
2848 Male, age 76, right hemisphere 9.9
2521 Female, age 94, right hemisphere 9.7
1847 Female, age 91, left hemisphere 8.1
Subiculum
nTPM: 16.5
2438 Female, age 94, left hemisphere 24.8
1901 Male, age 80, both hemispheres 24.0
1977 Female, age 85, both hemispheres 17.1
2042 Male, age 76, both hemispheres 16.2
2619 Male, age 74, both hemispheres 10.3
2729 Female, age 91, right hemisphere 6.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 13.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 13.6
Samples: 197

Max nTPM: 50.4
Min nTPM: 0.3
Std nTPM: 9.4
Median nTPM: 12.6
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 50.4
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 41.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 41.8
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 40.6
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 37.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 37.6
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 37.2
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 36.4
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 34.2
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 33.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 33.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 236.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 236.7
FF:10153-102I9 76 years, female 261.1
FF:10169-103B7 60 years, female 212.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 66.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 66.8
Samples: 4

Max nTPM: 87.5
Min nTPM: 38.3
Sample A Female 87.5
Sample B Female 62.4
Sample C Male 79.0
Sample D Male 38.3
Entorhinal cortex
nTPM: 47.0
Samples: 4

Max nTPM: 60.8
Min nTPM: 38.6
Sample A Female 43.6
Sample B Female 60.8
Sample C Male 38.6
Sample D Male 45.0
Subiculum
nTPM: 39.7
Samples: 4

Max nTPM: 46.1
Min nTPM: 31.9
Sample A Female 46.1
Sample B Female 43.0
Sample C Male 31.9
Sample D Male 37.9
Ventral hippocampus
nTPM: 48.8
Samples: 4

Max nTPM: 66.8
Min nTPM: 34.8
Sample A Female 56.4
Sample B Female 34.8
Sample C Male 37.2
Sample D Male 66.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 86.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 86.4
Samples: 4

Max nTPM: 93.2
Min nTPM: 73.4
Sample A Male 87.5
Sample B Male 91.4
Sample C Female 73.4
Sample D Female 93.2
Hippocampal formation
nTPM: 82.0
Samples: 4

Max nTPM: 102.8
Min nTPM: 71.3
Sample A Male 71.5
Sample B Male 82.5
Sample C Female 102.8
Sample D Female 71.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 7.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 7.7
69407827 Antisense, RP_050414_02_D12, Mouse strain C57BL/6J (56 days, male) 9.0
72128755 Antisense, RP_051017_04_C11, Mouse strain C57BL/6J (56 days, male) 6.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.