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MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:141.6 nTPM
HPA:141.6 nTPM
GTEx:207.2 nTPM
FANTOM5:255.2 Scaled Tags Per Million
Pig:83.1 nTPM
Mouse:160.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 141.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.0
2411 Female, age 72, unknown 146.8
2828 Female, age 72, unknown 138.8
1870 Female, age 42, unknown 132.3
1833 Male, age 53, unknown 125.4
2219 Male, age 76, both hemispheres 120.7
2019 Male, age 18, unknown 120.0
1830 Male, age 51, unknown 118.0
1827 Male, age 72, unknown 116.9
2666 Male, age 74, left hemisphere 111.3
2586 Male, age 75, left hemisphere 110.0
Dorsal raphe nucleus
nTPM: 141.6
2298 Female, age 72, unknown 155.5
2047 Male, age 72, unknown 142.3
2750 Male, age 76, both hemispheres 140.7
2016 Female, age 72, unknown 135.5
1828 Male, age 53, unknown 134.2
Inferior colliculus
nTPM: 129.1
2097 Female, age 72, unknown 140.0
1890 Male, age 53, unknown 131.7
1848 Female, age 42, unknown 128.9
2849 Male, age 72, unknown 115.9
Median raphe nucleus
nTPM: 127.0
2220 Male, age 76, midline 127.0
Pedunculopontine tegmental nucleus
nTPM: 129.8
1921 Female, age 85, both hemispheres 135.0
2334 Male, age 80, both hemispheres 134.6
2338 Male, age 61, both hemispheres 119.9
Periaquaductal grey, anterior
nTPM: 114.9
1947 Male, age 18, unknown 118.7
1795 Male, age 51, unknown 115.2
2502 Female, age 75, unknown 110.8
Periaquaductal grey, dorsal
nTPM: 123.2
2464 Female, age 72, unknown 136.3
1840 Male, age 53, unknown 123.1
2850 Male, age 76, both hemispheres 118.7
1831 Male, age 72, unknown 114.7
Periaquaductal grey, lateral
nTPM: 119.9
2053 Male, age 18, unknown 124.8
2272 Male, age 74, both hemispheres 119.7
2140 Male, age 76, both hemispheres 115.1
Pretectal area
nTPM: 121.7
2667 Female, age 75, unknown 134.2
1817 Female, age 42, unknown 129.8
2224 Female, age 72, unknown 127.8
1944 Female, age 72, unknown 125.9
2273 Male, age 74, both hemispheres 125.3
1815 Male, age 53, unknown 124.7
2825 Male, age 18, unknown 122.2
2316 Male, age 76, right hemisphere 117.0
1816 Male, age 51, unknown 116.8
2007 Male, age 72, unknown 112.5
2407 Male, age 75, both hemispheres 102.5
Red nucleus
nTPM: 133.6
1821 Female, age 72, unknown 150.5
2503 Female, age 72, unknown 148.5
1954 Female, age 42, unknown 143.1
2769 Male, age 72, unknown 139.0
1904 Male, age 53, unknown 138.2
2227 Male, age 72, unknown 138.0
2823 Male, age 76, right hemisphere 135.8
1865 Male, age 51, unknown 135.0
2725 Female, age 75, unknown 131.8
2785 Male, age 18, unknown 117.8
2588 Male, age 74, left hemisphere 116.3
2584 Male, age 75, left hemisphere 108.7
Substantia nigra
nTPM: 132.9
2241 Male, age 72, unknown 147.9
2699 Male, age 18, unknown 144.1
1916 Female, age 42, unknown 140.5
1851 Male, age 51, unknown 139.8
2409 Female, age 72, unknown 136.9
1889 Female, age 72, unknown 131.4
1941 Male, age 53, unknown 125.9
2590 Female, age 75, unknown 124.6
2665 Male, age 74, both hemispheres 123.6
2583 Male, age 75, right hemisphere 114.3
Superior colliculus
nTPM: 119.3
1995 Male, age 72, unknown 133.6
1913 Female, age 42, unknown 127.6
2087 Female, age 72, unknown 127.1
1796 Male, age 53, unknown 118.5
2587 Male, age 74, left hemisphere 118.5
2668 Female, age 75, unknown 118.1
1839 Male, age 51, unknown 118.0
1895 Male, age 76, right hemisphere 117.0
2261 Male, age 18, unknown 115.3
2664 Male, age 75, both hemispheres 99.0
Ventral tegmental area
nTPM: 132.4
2410 Female, age 72, unknown 142.3
1942 Male, age 51, unknown 133.4
1915 Female, age 42, unknown 132.9
2223 Female, age 72, unknown 130.9
2021 Male, age 53, unknown 128.2
2218 Male, age 76, both hemispheres 127.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 207.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.2
Samples: 139

Max nTPM: 459.5
Min nTPM: 60.0
Std nTPM: 75.0
Median nTPM: 193.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 459.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 416.8
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 409.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 401.1
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 373.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 367.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 365.7
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 363.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 359.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 335.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 332.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 255.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 255.2
FF:10158-103A5 76 years, female 255.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 83.1
Pig sample Sample description nTPM
Midbrain
nTPM: 83.1
Samples: 4

Max nTPM: 112.8
Min nTPM: 59.6
Sample A Female 112.8
Sample B Female 90.3
Sample C Male 69.7
Sample D Male 59.6
Periaqueductal gray
nTPM: 73.3
Samples: 3

Max nTPM: 84.4
Min nTPM: 63.7
Sample B Female 84.4
Sample C Male 71.9
Sample D Male 63.7
Substantia nigra
nTPM: 81.7
Samples: 4

Max nTPM: 90.0
Min nTPM: 76.2
Sample A Female 90.0
Sample B Female 77.6
Sample C Male 76.2
Sample D Male 83.0
Superior colliculi
nTPM: 72.2
Samples: 4

Max nTPM: 82.0
Min nTPM: 63.8
Sample A Female 82.0
Sample B Female 63.8
Sample C Male 75.3
Sample D Male 67.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 160.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 160.1
Samples: 4

Max nTPM: 165.3
Min nTPM: 150.1
Sample A Male 165.3
Sample B Male 162.0
Sample C Female 150.1
Sample D Female 163.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
76115729 Antisense, RP_060620_02_B08, Mouse strain C57BL/6J (56 days, male) 1.5
71381040 Antisense, RP_050503_01_F02, Mouse strain C57BL/6J (56 days, male) 1.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.