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HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:109.0 nTPM
HPA:109.0 nTPM
GTEx:93.1 nTPM
FANTOM5:156.8 Scaled Tags Per Million
Pig:61.8 nTPM
Mouse:106.6 nTPM
Allen mouse:1.2 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA037539Antibody HPA037540
Glial cells HighMedium
Neuronal cells Not detectedLow





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 109.0
Sample id Sample description nTPM
Hippocampus
nTPM: 107.4
1911 Female, age 85, right hemisphere 111.5
2148 Female, age 91, left hemisphere 111.0
1898 Male, age 80, left hemisphere 109.1
2529 Female, age 94, left hemisphere 106.6
1855 Male, age 76, left hemisphere 106.5
2621 Female, age 67, right hemisphere 100.0
Dentate gyrus
nTPM: 102.6
2528 Male, age 74, both hemispheres 114.4
2246 Female, age 85, both hemispheres 106.0
2010 Male, age 76, both hemispheres 102.9
1927 Female, age 91, both hemispheres 101.2
2530 Female, age 94, left hemisphere 100.6
2531 Female, age 67, both hemispheres 90.3
Entorhinal gyrus
nTPM: 101.7
2117 Female, age 91, right hemisphere 120.3
1938 Female, age 85, left hemisphere 103.4
2764 Male, age 80, right hemisphere 100.5
1787 Male, age 76, left hemisphere 98.4
2686 Male, age 75, right hemisphere 95.2
2613 Female, age 94, left hemisphere 92.1
Hippocampus, CA1
nTPM: 106.4
2527 Male, age 74, both hemispheres 116.1
2082 Female, age 91, right hemisphere 110.0
1873 Female, age 85, both hemispheres 108.9
2749 Male, age 80, left hemisphere 99.5
2045 Male, age 76, both hemispheres 97.6
Hippocampus, CA2
nTPM: 106.6
2249 Male, age 74, both hemispheres 121.6
2113 Female, age 91, right hemisphere 112.0
1963 Male, age 80, left hemisphere 107.6
1940 Female, age 85, left hemisphere 102.5
2437 Female, age 94, left hemisphere 99.7
1892 Male, age 76, both hemispheres 96.4
Hippocampus, CA3
nTPM: 102.5
2436 Male, age 74, both hemispheres 115.7
1891 Female, age 85, both hemispheres 113.2
1867 Male, age 76, both hemispheres 101.8
2620 Female, age 94, left hemisphere 97.8
2137 Male, age 80, left hemisphere 95.6
2861 Female, age 67, both hemispheres 90.8
Parahippocampal cortex
nTPM: 102.5
2250 Female, age 67, right hemisphere 107.9
2692 Male, age 74, both hemispheres 105.6
1990 Female, age 91, right hemisphere 105.1
2018 Male, age 76, both hemispheres 104.4
1850 Male, age 80, both hemispheres 103.1
1933 Female, age 85, both hemispheres 102.4
2622 Female, age 67, right hemisphere 101.4
2245 Female, age 91, both hemispheres 100.2
2693 Female, age 94, both hemispheres 99.1
2532 Female, age 72, left hemisphere 95.7
Perirhinal gyrus
nTPM: 98.5
1847 Female, age 91, left hemisphere 104.8
1794 Male, age 80, right hemisphere 100.5
1841 Female, age 85, right hemisphere 98.2
2521 Female, age 94, right hemisphere 96.2
2848 Male, age 76, right hemisphere 93.0
Subiculum
nTPM: 109.0
2729 Female, age 91, right hemisphere 123.7
2619 Male, age 74, both hemispheres 108.3
1901 Male, age 80, both hemispheres 106.4
2042 Male, age 76, both hemispheres 105.6
1977 Female, age 85, both hemispheres 105.5
2438 Female, age 94, left hemisphere 104.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 93.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 93.1
Samples: 197

Max nTPM: 186.1
Min nTPM: 39.8
Std nTPM: 25.8
Median nTPM: 90.4
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 186.1
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 154.9
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 153.7
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 153.0
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 152.8
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 152.3
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 150.5
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 147.5
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 146.9
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 145.0
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 143.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 156.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 156.8
FF:10169-103B7 60 years, female 161.1
FF:10153-102I9 76 years, female 152.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 61.8
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 60.2
Samples: 4

Max nTPM: 75.2
Min nTPM: 45.8
Sample A Female 75.2
Sample B Female 52.8
Sample C Male 67.1
Sample D Male 45.8
Entorhinal cortex
nTPM: 58.2
Samples: 4

Max nTPM: 72.1
Min nTPM: 44.8
Sample A Female 51.9
Sample B Female 72.1
Sample C Male 63.9
Sample D Male 44.8
Subiculum
nTPM: 61.8
Samples: 4

Max nTPM: 78.2
Min nTPM: 50.5
Sample A Female 78.2
Sample B Female 64.2
Sample C Male 54.3
Sample D Male 50.5
Ventral hippocampus
nTPM: 57.8
Samples: 4

Max nTPM: 63.9
Min nTPM: 51.2
Sample A Female 59.1
Sample B Female 56.9
Sample C Male 63.9
Sample D Male 51.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 106.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 97.4
Samples: 4

Max nTPM: 107.7
Min nTPM: 86.4
Sample A Male 103.0
Sample B Male 92.5
Sample C Female 107.7
Sample D Female 86.4
Hippocampal formation
nTPM: 106.6
Samples: 4

Max nTPM: 117.6
Min nTPM: 89.1
Sample A Male 116.5
Sample B Male 89.1
Sample C Female 103.1
Sample D Female 117.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.2
76115729 Antisense, RP_060620_02_B08, Mouse strain C57BL/6J (56 days, male) 1.5
71381040 Antisense, RP_050503_01_F02, Mouse strain C57BL/6J (56 days, male) 0.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
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